Hb_007811_050

Information

Type -
Description -
Location Contig7811: 53432-56858
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11410g
description hypothetical protein
nr
ID XP_012074945.1
description PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID A0A067KUX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09077 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57982: 53436-56832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007811_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
2 Hb_000649_110 0.0888159996 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
3 Hb_002675_110 0.0891250486 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
4 Hb_001221_110 0.0920874741 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
5 Hb_000402_150 0.0931510949 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
6 Hb_004586_300 0.0934397005 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_011360_050 0.0973514865 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
8 Hb_000802_090 0.0983932875 - - ornithine aminotransferase, putative [Ricinus communis]
9 Hb_001878_050 0.1013258239 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
10 Hb_002344_060 0.1016604248 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
11 Hb_012239_020 0.1037878611 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
12 Hb_003544_060 0.1043441545 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
13 Hb_004143_100 0.1059040424 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000684_510 0.1061541141 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
15 Hb_003906_200 0.111118225 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
16 Hb_000402_190 0.1114252071 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
17 Hb_001205_200 0.1114427514 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003398_080 0.1114836896 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_005551_020 0.11156504 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_003120_080 0.1152481222 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007811_050 Hb_007811_050 Hb_000649_110 Hb_000649_110 Hb_007811_050--Hb_000649_110 Hb_002675_110 Hb_002675_110 Hb_007811_050--Hb_002675_110 Hb_001221_110 Hb_001221_110 Hb_007811_050--Hb_001221_110 Hb_000402_150 Hb_000402_150 Hb_007811_050--Hb_000402_150 Hb_004586_300 Hb_004586_300 Hb_007811_050--Hb_004586_300 Hb_011360_050 Hb_011360_050 Hb_007811_050--Hb_011360_050 Hb_000649_110--Hb_001221_110 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_008725_230 Hb_008725_230 Hb_000649_110--Hb_008725_230 Hb_001359_050 Hb_001359_050 Hb_000649_110--Hb_001359_050 Hb_000886_050 Hb_000886_050 Hb_000649_110--Hb_000886_050 Hb_184798_080 Hb_184798_080 Hb_002675_110--Hb_184798_080 Hb_005918_010 Hb_005918_010 Hb_002675_110--Hb_005918_010 Hb_002046_110 Hb_002046_110 Hb_002675_110--Hb_002046_110 Hb_001153_190 Hb_001153_190 Hb_002675_110--Hb_001153_190 Hb_000684_510 Hb_000684_510 Hb_002675_110--Hb_000684_510 Hb_001221_110--Hb_001359_050 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_008114_040 Hb_008114_040 Hb_000402_150--Hb_008114_040 Hb_000402_150--Hb_000684_510 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_001357_310 Hb_001357_310 Hb_000402_150--Hb_001357_310 Hb_012092_050 Hb_012092_050 Hb_000402_150--Hb_012092_050 Hb_006588_060 Hb_006588_060 Hb_000402_150--Hb_006588_060 Hb_006059_040 Hb_006059_040 Hb_004586_300--Hb_006059_040 Hb_002232_410 Hb_002232_410 Hb_004586_300--Hb_002232_410 Hb_000069_380 Hb_000069_380 Hb_004586_300--Hb_000069_380 Hb_002445_060 Hb_002445_060 Hb_004586_300--Hb_002445_060 Hb_004586_300--Hb_001221_110 Hb_000120_170 Hb_000120_170 Hb_004586_300--Hb_000120_170 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0132 15.3479 10.4399 9.51393 4.39599 7.55293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0968 6.25178 6.09849 11.5373 4.48783

CAGE analysis