Hb_007818_020

Information

Type -
Description -
Location Contig7818: 28088-29685
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_86357
description hypothetical protein
nr
ID XP_001772005.1
description predicted protein [Physcomitrella patens]
swissprot
ID -
description -
trembl
ID A9T070
description Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_86357 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcriptional corepressor seuss

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007818_020 0.0 - - predicted protein [Physcomitrella patens]
2 Hb_004228_020 0.0960747722 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
3 Hb_006663_040 0.1188578599 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
4 Hb_052764_060 0.1226655069 - - XPA-binding protein, putative [Ricinus communis]
5 Hb_000832_320 0.1242512906 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
6 Hb_000189_100 0.1247949576 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
7 Hb_001268_380 0.1272247528 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
8 Hb_006185_060 0.1275144077 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
9 Hb_024185_010 0.1282490817 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
10 Hb_018133_050 0.1292052555 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
11 Hb_000896_060 0.1294633609 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000094_320 0.1309697938 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
13 Hb_005539_090 0.1311527396 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
14 Hb_003994_100 0.1325320443 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
15 Hb_000321_150 0.1335703508 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
16 Hb_002174_030 0.1341511167 - - transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_003805_050 0.1357590022 - - -
18 Hb_000080_170 0.136049769 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_002022_070 0.1370935506 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
20 Hb_003284_030 0.137712965 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007818_020 Hb_007818_020 Hb_004228_020 Hb_004228_020 Hb_007818_020--Hb_004228_020 Hb_006663_040 Hb_006663_040 Hb_007818_020--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_007818_020--Hb_052764_060 Hb_000832_320 Hb_000832_320 Hb_007818_020--Hb_000832_320 Hb_000189_100 Hb_000189_100 Hb_007818_020--Hb_000189_100 Hb_001268_380 Hb_001268_380 Hb_007818_020--Hb_001268_380 Hb_004228_020--Hb_001268_380 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_000832_320 Hb_018133_050 Hb_018133_050 Hb_006663_040--Hb_018133_050 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_000544_060 Hb_000544_060 Hb_006663_040--Hb_000544_060 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_018133_050 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040 Hb_000832_320--Hb_018133_050 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_000189_100--Hb_018133_050 Hb_000189_100--Hb_000832_320 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510 Hb_009767_080 Hb_009767_080 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697678 1.72807 0.54216 0.26391 0.900989 0.90372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.088854 0.419061 0.741797 0.541611 0.821643

CAGE analysis