Hb_007820_010

Information

Type transcription factor
Description TF Family: SWI/SNF-SWI3
Location Contig7820: 14856-20159
Sequence    

Annotation

kegg
ID rcu:RCOM_0721980
description amine oxidase, putative
nr
ID XP_012080962.1
description PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
swissprot
ID Q9CAE3
description Protein FLOWERING LOCUS D OS=Arabidopsis thaliana GN=FLD PE=1 SV=1
trembl
ID A0A067K607
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16157 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein flowering locus d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58004: 17469-18500 , PASA_asmbl_58005: 18807-19443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007820_010 0.0 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
2 Hb_002099_080 0.0613908931 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
3 Hb_002055_040 0.0749354632 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
4 Hb_003032_020 0.0753106707 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
5 Hb_000366_040 0.0863089324 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
6 Hb_000204_120 0.0944188055 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
7 Hb_000352_190 0.0949176398 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
8 Hb_002063_020 0.0961400641 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
9 Hb_000941_150 0.0969407103 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
10 Hb_004712_130 0.0969634403 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
11 Hb_000094_070 0.0986134617 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_000365_240 0.0986435456 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
13 Hb_000388_090 0.0996666873 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
14 Hb_004020_020 0.0999369815 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
15 Hb_004374_110 0.1008009974 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
16 Hb_002316_160 0.1016633514 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
17 Hb_011228_010 0.102831866 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002235_200 0.103352401 - - pattern formation protein, putative [Ricinus communis]
19 Hb_002667_050 0.1034491793 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
20 Hb_001865_070 0.1046917638 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007820_010 Hb_007820_010 Hb_002099_080 Hb_002099_080 Hb_007820_010--Hb_002099_080 Hb_002055_040 Hb_002055_040 Hb_007820_010--Hb_002055_040 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002063_020 Hb_002063_020 Hb_002099_080--Hb_002063_020 Hb_000388_090 Hb_000388_090 Hb_002099_080--Hb_000388_090 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_002055_040--Hb_000388_090 Hb_027472_070 Hb_027472_070 Hb_003032_020--Hb_027472_070 Hb_003032_020--Hb_002099_080 Hb_003032_020--Hb_000352_190 Hb_003032_020--Hb_002063_020 Hb_003032_020--Hb_000366_040 Hb_000366_040--Hb_002063_020 Hb_000366_040--Hb_000352_190 Hb_000366_040--Hb_000388_090 Hb_004712_130 Hb_004712_130 Hb_000366_040--Hb_004712_130 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020 Hb_000204_120--Hb_005736_020 Hb_002686_090 Hb_002686_090 Hb_000204_120--Hb_002686_090 Hb_011671_410 Hb_011671_410 Hb_000204_120--Hb_011671_410 Hb_001865_070 Hb_001865_070 Hb_000204_120--Hb_001865_070 Hb_000204_120--Hb_000388_090 Hb_000672_040 Hb_000672_040 Hb_000204_120--Hb_000672_040 Hb_028912_050 Hb_028912_050 Hb_000352_190--Hb_028912_050 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_000352_190--Hb_002063_020 Hb_004225_050 Hb_004225_050 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42692 8.14164 5.5634 8.68577 7.13596 9.90047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21636 4.63765 16.0945 9.41651 16.7928

CAGE analysis