Hb_007827_010

Information

Type -
Description -
Location Contig7827: 19960-22931
Sequence    

Annotation

kegg
ID rcu:RCOM_0508240
description phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative
nr
ID XP_012089524.1
description PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
swissprot
ID Q2M2U4
description Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1
trembl
ID A0A067JH11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00139 PE=4 SV=1
Gene Ontology
ID GO:0016757
description phosphatidylinositol n-acetylglucosaminyltransferase subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58010: 20017-22948 , PASA_asmbl_58011: 20030-20670 , PASA_asmbl_58012: 20017-22948
cDNA
(Sanger)
(ID:Location)		 008_A06.ab1: 20078-22748 , 030_C15.ab1: 20078-22675 , 043_E22.ab1: 20030-20667 , 044_E04.ab1: 20030-20667

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007827_010 0.0 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
2 Hb_002609_200 0.071871941 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_001279_080 0.0775219971 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
4 Hb_002872_050 0.0799844378 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
5 Hb_000107_150 0.0831893276 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_000431_070 0.0840388163 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
7 Hb_000035_270 0.0845209714 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
8 Hb_000110_250 0.0851701009 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
9 Hb_003678_020 0.0868220128 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001318_260 0.092680498 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
11 Hb_000566_120 0.0934737386 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
12 Hb_001019_150 0.0947586351 - - Acyl-protein thioesterase, putative [Ricinus communis]
13 Hb_004951_060 0.0948189851 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
14 Hb_014720_110 0.0966807682 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
15 Hb_028396_010 0.1006581191 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
16 Hb_000045_310 0.100996808 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
17 Hb_011330_020 0.1012535892 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
18 Hb_002014_030 0.1013455944 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
19 Hb_000877_080 0.1014263287 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
20 Hb_000155_160 0.1017329115 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]

Gene co-expression network

sample Hb_007827_010 Hb_007827_010 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_000566_120 Hb_000566_120 Hb_002609_200--Hb_000566_120 Hb_002609_200--Hb_001279_080 Hb_002609_200--Hb_000431_070 Hb_011457_050 Hb_011457_050 Hb_002609_200--Hb_011457_050 Hb_001353_010 Hb_001353_010 Hb_002609_200--Hb_001353_010 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000431_070--Hb_000045_310 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_002759_190 Hb_002759_190 Hb_000035_270--Hb_002759_190 Hb_003678_020 Hb_003678_020 Hb_000035_270--Hb_003678_020 Hb_000035_270--Hb_014720_110 Hb_000035_270--Hb_002872_050 Hb_000317_260 Hb_000317_260 Hb_000035_270--Hb_000317_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39909 4.9635 15.5307 15.1551 7.12269 7.67081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1781 27.0226 9.47529 11.997 18.5902

CAGE analysis