Hb_007846_030

Information

Type -
Description -
Location Contig7846: 22724-23446
Sequence    

Annotation

kegg
ID tcc:TCM_021839
description hypothetical protein
nr
ID XP_007026887.1
description Uncharacterized protein TCM_021839 [Theobroma cacao]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID A0A061EYN7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021839 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58055: 22685-23085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007846_030 0.0 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
2 Hb_097292_010 0.052226307 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
3 Hb_007426_190 0.0685023 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
4 Hb_005694_170 0.0862146534 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
5 Hb_005731_040 0.0884452801 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
6 Hb_003376_110 0.0968260002 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000878_080 0.1020711869 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
8 Hb_000861_060 0.1031940574 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
9 Hb_000586_110 0.1093432869 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_003598_020 0.1132705512 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
11 Hb_001329_050 0.1192422788 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000227_300 0.1217330503 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003248_030 0.1250470335 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
14 Hb_011861_130 0.1262154298 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
15 Hb_004880_040 0.1300924151 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
16 Hb_000213_020 0.1313261336 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001288_040 0.1315510128 - - -
18 Hb_000933_040 0.1338988013 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_004005_060 0.1355712399 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
20 Hb_026218_010 0.1368351305 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007846_030 Hb_007846_030 Hb_097292_010 Hb_097292_010 Hb_007846_030--Hb_097292_010 Hb_007426_190 Hb_007426_190 Hb_007846_030--Hb_007426_190 Hb_005694_170 Hb_005694_170 Hb_007846_030--Hb_005694_170 Hb_005731_040 Hb_005731_040 Hb_007846_030--Hb_005731_040 Hb_003376_110 Hb_003376_110 Hb_007846_030--Hb_003376_110 Hb_000878_080 Hb_000878_080 Hb_007846_030--Hb_000878_080 Hb_097292_010--Hb_005731_040 Hb_000861_060 Hb_000861_060 Hb_097292_010--Hb_000861_060 Hb_000586_110 Hb_000586_110 Hb_097292_010--Hb_000586_110 Hb_097292_010--Hb_007426_190 Hb_097292_010--Hb_000878_080 Hb_000227_300 Hb_000227_300 Hb_007426_190--Hb_000227_300 Hb_007426_190--Hb_000861_060 Hb_007426_190--Hb_005731_040 Hb_051408_010 Hb_051408_010 Hb_007426_190--Hb_051408_010 Hb_005694_170--Hb_003376_110 Hb_164337_010 Hb_164337_010 Hb_005694_170--Hb_164337_010 Hb_003207_210 Hb_003207_210 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030 Hb_005731_040--Hb_000586_110 Hb_003598_020 Hb_003598_020 Hb_005731_040--Hb_003598_020 Hb_026218_010 Hb_026218_010 Hb_005731_040--Hb_026218_010 Hb_005731_040--Hb_000861_060 Hb_003376_110--Hb_003207_210 Hb_003376_110--Hb_164337_010 Hb_000160_190 Hb_000160_190 Hb_003376_110--Hb_000160_190 Hb_000056_290 Hb_000056_290 Hb_003376_110--Hb_000056_290 Hb_002028_270 Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_004005_060 Hb_004005_060 Hb_000878_080--Hb_004005_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135985 0.811528 0.855893 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.120766

CAGE analysis