Hb_007846_040

Information

Type -
Description -
Location Contig7846: 31694-36198
Sequence    

Annotation

kegg
ID cit:102616798
description uncharacterized LOC102616798
nr
ID XP_012087989.1
description PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25109 PE=4 SV=1
Gene Ontology
ID GO:0009941
description reticulata-related 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58056: 31609-36358 , PASA_asmbl_58057: 31534-36358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007846_040 0.0 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
2 Hb_000640_150 0.1953172191 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
3 Hb_000003_390 0.1989425895 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
4 Hb_001907_100 0.2030298155 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
5 Hb_002232_150 0.2036271975 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
6 Hb_054885_020 0.2200426113 - - -
7 Hb_059641_010 0.222039601 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_000270_210 0.2292261551 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
9 Hb_134894_010 0.2299231896 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
10 Hb_118720_010 0.2299562754 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
11 Hb_010531_050 0.2307288464 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
12 Hb_000997_410 0.2331045267 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
13 Hb_005144_030 0.2374637135 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
14 Hb_010261_010 0.2375931684 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
15 Hb_005464_030 0.2377331107 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000453_150 0.2379810615 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_011716_110 0.2385296466 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
18 Hb_000062_060 0.2397478234 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
19 Hb_002783_010 0.2401127443 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
20 Hb_001493_010 0.2404278355 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]

Gene co-expression network

sample Hb_007846_040 Hb_007846_040 Hb_000640_150 Hb_000640_150 Hb_007846_040--Hb_000640_150 Hb_000003_390 Hb_000003_390 Hb_007846_040--Hb_000003_390 Hb_001907_100 Hb_001907_100 Hb_007846_040--Hb_001907_100 Hb_002232_150 Hb_002232_150 Hb_007846_040--Hb_002232_150 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_059641_010 Hb_059641_010 Hb_007846_040--Hb_059641_010 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000270_210 Hb_000270_210 Hb_000640_150--Hb_000270_210 Hb_000640_150--Hb_000003_390 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_007257_050 Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_181975_010 Hb_181975_010 Hb_001907_100--Hb_181975_010 Hb_001907_100--Hb_007257_050 Hb_002232_150--Hb_000270_210 Hb_010531_050 Hb_010531_050 Hb_002232_150--Hb_010531_050 Hb_002232_150--Hb_000640_150 Hb_005464_030 Hb_005464_030 Hb_002232_150--Hb_005464_030 Hb_164458_010 Hb_164458_010 Hb_002232_150--Hb_164458_010 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140 Hb_049958_010 Hb_049958_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_003854_020 Hb_003854_020 Hb_059641_010--Hb_003854_020 Hb_144550_020 Hb_144550_020 Hb_059641_010--Hb_144550_020 Hb_000123_030 Hb_000123_030 Hb_059641_010--Hb_000123_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3259 23.8364 4.12934 11.99 3.91111 23.2925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15228 0.449756 0.644527 15.0516 0.993485

CAGE analysis