Hb_007849_040

Information

Type -
Description -
Location Contig7849: 37120-37659
Sequence    

Annotation

kegg
ID vvi:100260366
description protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
nr
ID XP_002267312.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID F6H618
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007849_040 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
2 Hb_017987_090 0.128282113 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
3 Hb_000567_200 0.1311546803 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
4 Hb_001186_060 0.1340439901 - - -
5 Hb_003978_010 0.1387670493 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_001195_100 0.1388433018 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
7 Hb_000033_050 0.1463456402 - - -
8 Hb_004225_180 0.1472837587 - - bel1 homeotic protein, putative [Ricinus communis]
9 Hb_180333_010 0.1478118747 - - -
10 Hb_010407_070 0.1496228293 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
11 Hb_001141_080 0.1501637181 - - PREDICTED: protein RDM1 [Jatropha curcas]
12 Hb_011472_040 0.1502118345 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
13 Hb_003428_110 0.1531202641 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
14 Hb_006189_010 0.1554728758 - - -
15 Hb_001975_070 0.1578766134 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
16 Hb_000953_140 0.158986675 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_153150_010 0.1618165271 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
18 Hb_084934_010 0.1635820739 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
19 Hb_002660_140 0.1680607257 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
20 Hb_001930_070 0.1682667664 - - -

Gene co-expression network

sample Hb_007849_040 Hb_007849_040 Hb_017987_090 Hb_017987_090 Hb_007849_040--Hb_017987_090 Hb_000567_200 Hb_000567_200 Hb_007849_040--Hb_000567_200 Hb_001186_060 Hb_001186_060 Hb_007849_040--Hb_001186_060 Hb_003978_010 Hb_003978_010 Hb_007849_040--Hb_003978_010 Hb_001195_100 Hb_001195_100 Hb_007849_040--Hb_001195_100 Hb_000033_050 Hb_000033_050 Hb_007849_040--Hb_000033_050 Hb_000050_100 Hb_000050_100 Hb_017987_090--Hb_000050_100 Hb_000953_140 Hb_000953_140 Hb_017987_090--Hb_000953_140 Hb_000050_090 Hb_000050_090 Hb_017987_090--Hb_000050_090 Hb_015401_020 Hb_015401_020 Hb_017987_090--Hb_015401_020 Hb_001817_180 Hb_001817_180 Hb_017987_090--Hb_001817_180 Hb_003428_110 Hb_003428_110 Hb_000567_200--Hb_003428_110 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_002924_050 Hb_002924_050 Hb_000567_200--Hb_002924_050 Hb_006499_010 Hb_006499_010 Hb_000567_200--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000567_200--Hb_001930_070 Hb_001518_020 Hb_001518_020 Hb_000567_200--Hb_001518_020 Hb_001186_060--Hb_001930_070 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_001186_060--Hb_006499_010 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_001186_060--Hb_000033_050 Hb_011472_040 Hb_011472_040 Hb_003978_010--Hb_011472_040 Hb_001975_070 Hb_001975_070 Hb_003978_010--Hb_001975_070 Hb_004225_180 Hb_004225_180 Hb_003978_010--Hb_004225_180 Hb_003978_010--Hb_001195_100 Hb_010407_070 Hb_010407_070 Hb_003978_010--Hb_010407_070 Hb_001195_100--Hb_001975_070 Hb_025048_030 Hb_025048_030 Hb_001195_100--Hb_025048_030 Hb_005333_020 Hb_005333_020 Hb_001195_100--Hb_005333_020 Hb_001341_030 Hb_001341_030 Hb_001195_100--Hb_001341_030 Hb_001009_050 Hb_001009_050 Hb_001195_100--Hb_001009_050 Hb_153150_010 Hb_153150_010 Hb_001195_100--Hb_153150_010 Hb_000033_050--Hb_006499_010 Hb_000033_050--Hb_001930_070 Hb_000033_050--Hb_000163_290 Hb_011716_040 Hb_011716_040 Hb_000033_050--Hb_011716_040 Hb_000033_050--Hb_000371_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
366.778 155.547 0.36843 8.15035 182.51 202.435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
246.357 117.057 97.101 75.3689 0.708157

CAGE analysis