Hb_007850_010

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig7850: 20498-21490
Sequence    

Annotation

kegg
ID rcu:RCOM_1467360
description hypothetical protein
nr
ID XP_012080436.1
description PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
swissprot
ID Q8LDR0
description Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2
trembl
ID A0A067KGJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11766 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58084: 19419-19710 , PASA_asmbl_58085: 20308-22273 , PASA_asmbl_58086: 20279-21771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_010 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
2 Hb_000473_150 0.1131862008 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
3 Hb_019863_060 0.1146601703 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
4 Hb_001404_090 0.1297839141 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
5 Hb_001242_190 0.1525136361 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
6 Hb_004013_020 0.1545852539 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
7 Hb_000175_270 0.1570994333 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
8 Hb_061908_020 0.1592356007 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_001951_240 0.1595253028 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
10 Hb_012812_010 0.1609126133 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
11 Hb_000059_130 0.1613106269 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
12 Hb_004166_010 0.162757133 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
13 Hb_000684_050 0.1640178416 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
14 Hb_072276_010 0.1655890296 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
15 Hb_000221_180 0.1660909276 - - VQ motif-containing family protein [Populus trichocarpa]
16 Hb_132840_030 0.1685401705 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
17 Hb_004994_300 0.1696972298 - - synaptotagmin, putative [Ricinus communis]
18 Hb_006618_020 0.1708046162 - - Vacuolar-processing enzyme precursor [Ricinus communis]
19 Hb_002686_210 0.1716402894 - - zinc finger protein, putative [Ricinus communis]
20 Hb_001619_160 0.1720008112 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]

Gene co-expression network

sample Hb_007850_010 Hb_007850_010 Hb_000473_150 Hb_000473_150 Hb_007850_010--Hb_000473_150 Hb_019863_060 Hb_019863_060 Hb_007850_010--Hb_019863_060 Hb_001404_090 Hb_001404_090 Hb_007850_010--Hb_001404_090 Hb_001242_190 Hb_001242_190 Hb_007850_010--Hb_001242_190 Hb_004013_020 Hb_004013_020 Hb_007850_010--Hb_004013_020 Hb_000175_270 Hb_000175_270 Hb_007850_010--Hb_000175_270 Hb_000473_150--Hb_019863_060 Hb_000059_130 Hb_000059_130 Hb_000473_150--Hb_000059_130 Hb_000413_250 Hb_000413_250 Hb_000473_150--Hb_000413_250 Hb_001951_100 Hb_001951_100 Hb_000473_150--Hb_001951_100 Hb_000445_130 Hb_000445_130 Hb_000473_150--Hb_000445_130 Hb_002918_320 Hb_002918_320 Hb_000473_150--Hb_002918_320 Hb_019863_060--Hb_000059_130 Hb_002154_020 Hb_002154_020 Hb_019863_060--Hb_002154_020 Hb_002804_010 Hb_002804_010 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_000416_060 Hb_000416_060 Hb_001404_090--Hb_000416_060 Hb_000094_150 Hb_000094_150 Hb_001404_090--Hb_000094_150 Hb_132840_030 Hb_132840_030 Hb_001404_090--Hb_132840_030 Hb_005588_120 Hb_005588_120 Hb_001404_090--Hb_005588_120 Hb_001307_200 Hb_001307_200 Hb_001404_090--Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001404_090--Hb_073973_020 Hb_001619_160 Hb_001619_160 Hb_001242_190--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001242_190--Hb_065525_010 Hb_006052_060 Hb_006052_060 Hb_001242_190--Hb_006052_060 Hb_001318_140 Hb_001318_140 Hb_001242_190--Hb_001318_140 Hb_000207_290 Hb_000207_290 Hb_001242_190--Hb_000207_290 Hb_001049_160 Hb_001049_160 Hb_001242_190--Hb_001049_160 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_000065_090 Hb_000065_090 Hb_004013_020--Hb_000065_090 Hb_001541_160 Hb_001541_160 Hb_004013_020--Hb_001541_160 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8437 152.839 36.1603 64.1816 9.83483 10.3079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3564 7.07641 7.17527 44.9414 84.7603

CAGE analysis