Hb_007850_030

Information

Type -
Description -
Location Contig7850: 39917-44697
Sequence    

Annotation

kegg
ID rcu:RCOM_1467490
description hypothetical protein
nr
ID XP_012080431.1
description PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11764 PE=4 SV=1
Gene Ontology
ID GO:0015630
description movement protein binding protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58088: 40049-44680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_030 0.0 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
2 Hb_002693_030 0.0676875591 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
3 Hb_053709_050 0.0704554567 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_001633_090 0.0749721153 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
5 Hb_004994_210 0.0845670393 - - phosphomannomutase family protein [Populus trichocarpa]
6 Hb_001482_050 0.0903388595 - - COR413-PM2, putative [Ricinus communis]
7 Hb_000227_390 0.0903901947 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
8 Hb_006637_030 0.0978972665 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_001279_190 0.0997930575 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
10 Hb_000926_200 0.1009952271 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
11 Hb_003498_100 0.1013600593 - - component of oligomeric golgi complex, putative [Ricinus communis]
12 Hb_081599_010 0.1015325029 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007741_130 0.1019767026 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
14 Hb_006570_160 0.1031855344 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
15 Hb_011716_010 0.1065572948 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
16 Hb_004079_130 0.1071066458 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
17 Hb_005754_040 0.1072225118 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
18 Hb_000120_890 0.1073175548 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
19 Hb_026198_010 0.1086260009 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
20 Hb_000017_260 0.109015307 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_007850_030 Hb_007850_030 Hb_002693_030 Hb_002693_030 Hb_007850_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_007850_030--Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_007850_030--Hb_001633_090 Hb_004994_210 Hb_004994_210 Hb_007850_030--Hb_004994_210 Hb_001482_050 Hb_001482_050 Hb_007850_030--Hb_001482_050 Hb_000227_390 Hb_000227_390 Hb_007850_030--Hb_000227_390 Hb_006637_030 Hb_006637_030 Hb_002693_030--Hb_006637_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_053709_050--Hb_001633_090 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_001633_090--Hb_004994_210 Hb_007741_130 Hb_007741_130 Hb_001633_090--Hb_007741_130 Hb_001633_090--Hb_002693_030 Hb_000742_010 Hb_000742_010 Hb_001633_090--Hb_000742_010 Hb_000076_220 Hb_000076_220 Hb_004994_210--Hb_000076_220 Hb_004994_210--Hb_053709_050 Hb_000174_260 Hb_000174_260 Hb_004994_210--Hb_000174_260 Hb_006538_090 Hb_006538_090 Hb_004994_210--Hb_006538_090 Hb_004079_130 Hb_004079_130 Hb_001482_050--Hb_004079_130 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000120_810 Hb_000120_810 Hb_000227_390--Hb_000120_810 Hb_000227_390--Hb_004079_130 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000703_190 Hb_000703_190 Hb_000227_390--Hb_000703_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24837 5.06894 14.4476 13.2734 3.04549 3.07981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71221 6.91756 5.40242 8.19565 4.90708

CAGE analysis