Hb_007850_040

Information

Type -
Description -
Location Contig7850: 45417-47665
Sequence    

Annotation

kegg
ID rcu:RCOM_1467500
description hypothetical protein
nr
ID XP_002514606.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1467500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006268_010 0.0392506481 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
3 Hb_000155_270 0.0602500094 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
4 Hb_002622_020 0.0912929258 - - -
5 Hb_002282_030 0.0988029587 - - -
6 Hb_000891_060 0.1011597899 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
7 Hb_000472_030 0.1015853748 - - -
8 Hb_000616_060 0.1028874233 - - -
9 Hb_060272_010 0.1032112938 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
10 Hb_000575_010 0.1052484336 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
11 Hb_001157_130 0.1067986555 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
12 Hb_005056_030 0.1135215145 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
13 Hb_086122_030 0.1158713454 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
14 Hb_031954_010 0.124629828 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000761_030 0.1247578183 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
16 Hb_012762_070 0.1271255993 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
17 Hb_028207_030 0.1284352733 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
18 Hb_031862_090 0.1306145376 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_161981_010 0.1352996148 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
20 Hb_009543_040 0.1385801979 - - -

Gene co-expression network

sample Hb_007850_040 Hb_007850_040 Hb_006268_010 Hb_006268_010 Hb_007850_040--Hb_006268_010 Hb_000155_270 Hb_000155_270 Hb_007850_040--Hb_000155_270 Hb_002622_020 Hb_002622_020 Hb_007850_040--Hb_002622_020 Hb_002282_030 Hb_002282_030 Hb_007850_040--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_007850_040--Hb_000891_060 Hb_000472_030 Hb_000472_030 Hb_007850_040--Hb_000472_030 Hb_006268_010--Hb_000155_270 Hb_005056_030 Hb_005056_030 Hb_006268_010--Hb_005056_030 Hb_006268_010--Hb_002622_020 Hb_086122_030 Hb_086122_030 Hb_006268_010--Hb_086122_030 Hb_060272_010 Hb_060272_010 Hb_006268_010--Hb_060272_010 Hb_000155_270--Hb_060272_010 Hb_001157_130 Hb_001157_130 Hb_000155_270--Hb_001157_130 Hb_000155_270--Hb_086122_030 Hb_161981_010 Hb_161981_010 Hb_000155_270--Hb_161981_010 Hb_002622_020--Hb_000472_030 Hb_012762_070 Hb_012762_070 Hb_002622_020--Hb_012762_070 Hb_002622_020--Hb_005056_030 Hb_000608_080 Hb_000608_080 Hb_002622_020--Hb_000608_080 Hb_002282_030--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_002282_030--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_002282_030--Hb_001157_130 Hb_031862_090 Hb_031862_090 Hb_002282_030--Hb_031862_090 Hb_000891_060--Hb_000616_060 Hb_000891_060--Hb_000575_010 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000891_060--Hb_132438_010 Hb_000472_030--Hb_012762_070 Hb_000472_030--Hb_000608_080 Hb_000472_030--Hb_005056_030 Hb_000334_250 Hb_000334_250 Hb_000472_030--Hb_000334_250 Hb_009515_010 Hb_009515_010 Hb_000472_030--Hb_009515_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0524029 0 0.0536629 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0769856 0

CAGE analysis