Hb_007850_080

Information

Type -
Description -
Location Contig7850: 87412-99230
Sequence    

Annotation

kegg
ID rcu:RCOM_1467930
description hypothetical protein
nr
ID XP_012080426.1
description PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11759 PE=4 SV=1
Gene Ontology
ID GO:0005774
description chaperone -domain superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58089: 89488-89779 , PASA_asmbl_58090: 91756-99505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_080 0.0 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
2 Hb_005656_100 0.0960642473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003442_070 0.102974709 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
4 Hb_033642_080 0.1050051091 - - V-type proton ATPase subunit E [Hevea brasiliensis]
5 Hb_008226_080 0.1098374744 - - Protein LRP16, putative [Ricinus communis]
6 Hb_004453_080 0.1103155773 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
7 Hb_002631_180 0.1118749277 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
8 Hb_061195_020 0.1152691871 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
9 Hb_002016_080 0.119306041 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
10 Hb_003020_150 0.1230442736 - - tropinone reductase, putative [Ricinus communis]
11 Hb_180074_010 0.1238342396 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
12 Hb_002304_160 0.1259922497 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
13 Hb_003994_260 0.1263575077 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
14 Hb_013405_140 0.1272531585 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
15 Hb_000673_020 0.130431471 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
16 Hb_003880_030 0.1314066261 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
17 Hb_165669_010 0.1315332484 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
18 Hb_008173_110 0.131639489 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000922_040 0.1321392691 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
20 Hb_034406_030 0.1321530738 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_007850_080 Hb_007850_080 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_003442_070 Hb_003442_070 Hb_007850_080--Hb_003442_070 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_008226_080 Hb_008226_080 Hb_007850_080--Hb_008226_080 Hb_004453_080 Hb_004453_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_000673_020 Hb_000673_020 Hb_005656_100--Hb_000673_020 Hb_001005_080 Hb_001005_080 Hb_005656_100--Hb_001005_080 Hb_003880_030 Hb_003880_030 Hb_005656_100--Hb_003880_030 Hb_013405_140 Hb_013405_140 Hb_005656_100--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_005656_100--Hb_000175_030 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_091433_020 Hb_091433_020 Hb_033642_080--Hb_091433_020 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_000496_120 Hb_000496_120 Hb_033642_080--Hb_000496_120 Hb_000417_360 Hb_000417_360 Hb_033642_080--Hb_000417_360 Hb_006478_150 Hb_006478_150 Hb_033642_080--Hb_006478_150 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010 Hb_002016_080 Hb_002016_080 Hb_008226_080--Hb_002016_080 Hb_007192_100 Hb_007192_100 Hb_008226_080--Hb_007192_100 Hb_000413_280 Hb_000413_280 Hb_008226_080--Hb_000413_280 Hb_061195_020 Hb_061195_020 Hb_008226_080--Hb_061195_020 Hb_000922_040 Hb_000922_040 Hb_008226_080--Hb_000922_040 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_004453_080--Hb_003442_070 Hb_004453_080--Hb_008226_080 Hb_002631_180--Hb_000922_040 Hb_002631_180--Hb_002016_080 Hb_000136_350 Hb_000136_350 Hb_002631_180--Hb_000136_350 Hb_002239_050 Hb_002239_050 Hb_002631_180--Hb_002239_050 Hb_163256_020 Hb_163256_020 Hb_002631_180--Hb_163256_020 Hb_003994_260 Hb_003994_260 Hb_002631_180--Hb_003994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28835 1.77344 1.16861 1.46099 0.269747 0.866031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26203 4.75009 2.75382 3.18113 1.58764

CAGE analysis