Hb_007853_030

Information

Type -
Description -
Location Contig7853: 37605-41376
Sequence    

Annotation

kegg
ID rcu:RCOM_1731920
description structural molecule, putative
nr
ID XP_002522199.1
description structural molecule, putative [Ricinus communis]
swissprot
ID Q5M755
description Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1
trembl
ID B9S880
description Structural molecule, putative OS=Ricinus communis GN=RCOM_1731920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58095: 37658-41374 , PASA_asmbl_58096: 37775-41376 , PASA_asmbl_58098: 36726-37864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007853_030 0.0 - - structural molecule, putative [Ricinus communis]
2 Hb_007681_010 0.0444093118 - - hypothetical protein RCOM_2128750 [Ricinus communis]
3 Hb_001166_010 0.0473842632 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
4 Hb_000069_220 0.0501637629 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
5 Hb_002042_090 0.0554410311 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
6 Hb_000069_440 0.0570854868 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
7 Hb_000172_660 0.0602863684 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
8 Hb_001789_220 0.0624895803 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
9 Hb_009476_030 0.0627656224 - - fatty acid desaturase [Manihot esculenta]
10 Hb_004411_010 0.0633221547 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
11 Hb_000144_130 0.0672278793 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002044_100 0.0692861998 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
13 Hb_000282_020 0.0706503367 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_031377_010 0.0718974184 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
15 Hb_041433_010 0.0733773441 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_000018_110 0.0746341667 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
17 Hb_011930_190 0.0768594318 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
18 Hb_000510_250 0.0783005496 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
19 Hb_005345_020 0.0784206325 - - Root phototropism protein, putative [Ricinus communis]
20 Hb_000210_030 0.0791093931 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]

Gene co-expression network

sample Hb_007853_030 Hb_007853_030 Hb_007681_010 Hb_007681_010 Hb_007853_030--Hb_007681_010 Hb_001166_010 Hb_001166_010 Hb_007853_030--Hb_001166_010 Hb_000069_220 Hb_000069_220 Hb_007853_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_000069_440 Hb_000069_440 Hb_007853_030--Hb_000069_440 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_001789_220 Hb_001789_220 Hb_007681_010--Hb_001789_220 Hb_041433_010 Hb_041433_010 Hb_007681_010--Hb_041433_010 Hb_007681_010--Hb_001166_010 Hb_002044_100 Hb_002044_100 Hb_007681_010--Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_007681_010--Hb_000144_130 Hb_001166_010--Hb_000144_130 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_000697_030 Hb_000697_030 Hb_000069_220--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000069_220--Hb_003573_030 Hb_004411_010 Hb_004411_010 Hb_000069_220--Hb_004411_010 Hb_000530_040 Hb_000530_040 Hb_000069_220--Hb_000530_040 Hb_000210_030 Hb_000210_030 Hb_000069_220--Hb_000210_030 Hb_009476_030 Hb_009476_030 Hb_002042_090--Hb_009476_030 Hb_002042_090--Hb_001789_220 Hb_001205_140 Hb_001205_140 Hb_002042_090--Hb_001205_140 Hb_005345_020 Hb_005345_020 Hb_002042_090--Hb_005345_020 Hb_002042_090--Hb_000210_030 Hb_000069_440--Hb_004411_010 Hb_000282_020 Hb_000282_020 Hb_000069_440--Hb_000282_020 Hb_023827_030 Hb_023827_030 Hb_000069_440--Hb_023827_030 Hb_000069_440--Hb_000069_220 Hb_001266_010 Hb_001266_010 Hb_000069_440--Hb_001266_010 Hb_000172_660--Hb_031377_010 Hb_004627_050 Hb_004627_050 Hb_000172_660--Hb_004627_050 Hb_002245_050 Hb_002245_050 Hb_000172_660--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_000172_660--Hb_002929_030 Hb_032880_010 Hb_032880_010 Hb_000172_660--Hb_032880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0734415 3.26263 115.872 36.2045 0 0.0193943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419508 0 0 0.132258 71.5247

CAGE analysis