Hb_007875_020

Information

Type -
Description -
Location Contig7875: 17054-25960
Sequence    

Annotation

kegg
ID rcu:RCOM_0248610
description pyruvate kinase, putative (EC:2.7.1.40)
nr
ID XP_012086002.1
description PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
swissprot
ID Q42806
description Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1
trembl
ID A0A067JQN6
description Pyruvate kinase OS=Jatropha curcas GN=JCGZ_22492 PE=3 SV=1
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58150: 17123-25915 , PASA_asmbl_58151: 17614-17907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007875_020 0.0 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
2 Hb_065521_010 0.0361733096 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
3 Hb_007017_100 0.0820693423 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
4 Hb_007386_030 0.0830186231 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
5 Hb_029510_090 0.0859273805 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_168319_060 0.0860299199 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
7 Hb_002448_020 0.1014051905 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_014967_020 0.1051640541 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000014_080 0.10534485 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
10 Hb_000258_210 0.1058196128 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
11 Hb_001040_200 0.1118719771 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_005731_070 0.1138234326 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004667_030 0.1161251512 - - hypothetical protein VITISV_034568 [Vitis vinifera]
14 Hb_000594_160 0.1216338321 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
15 Hb_000254_060 0.1220322606 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005663_090 0.1229067556 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
17 Hb_004282_010 0.1263104169 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
18 Hb_006501_100 0.1268797551 - - malic enzyme, putative [Ricinus communis]
19 Hb_022250_160 0.1276459206 - - respiratory burst oxidase A [Manihot esculenta]
20 Hb_000127_080 0.1313499064 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]

Gene co-expression network

sample Hb_007875_020 Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_007875_020--Hb_065521_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007386_030 Hb_007386_030 Hb_007875_020--Hb_007386_030 Hb_029510_090 Hb_029510_090 Hb_007875_020--Hb_029510_090 Hb_168319_060 Hb_168319_060 Hb_007875_020--Hb_168319_060 Hb_002448_020 Hb_002448_020 Hb_007875_020--Hb_002448_020 Hb_065521_010--Hb_029510_090 Hb_065521_010--Hb_002448_020 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_065521_010--Hb_007386_030 Hb_005731_070 Hb_005731_070 Hb_007017_100--Hb_005731_070 Hb_008175_050 Hb_008175_050 Hb_007017_100--Hb_008175_050 Hb_007017_100--Hb_065521_010 Hb_007017_100--Hb_007386_030 Hb_000714_060 Hb_000714_060 Hb_007017_100--Hb_000714_060 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007386_030--Hb_005731_070 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_029510_090--Hb_168319_060 Hb_029510_090--Hb_007386_030 Hb_029510_090--Hb_002448_020 Hb_000254_060 Hb_000254_060 Hb_029510_090--Hb_000254_060 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_060152_010 Hb_060152_010 Hb_168319_060--Hb_060152_010 Hb_168319_060--Hb_000254_060 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0324396 4.21991 10.425 21.8593 0.0436404 0.0445506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042364 0 0 21.4395 15.1355

CAGE analysis