Hb_007875_030

Information

Type -
Description -
Location Contig7875: 26088-33130
Sequence    

Annotation

kegg
ID rcu:RCOM_0248600
description tubulin-specific chaperone B, putative
nr
ID XP_012086001.1
description PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
swissprot
ID Q67Z52
description Tubulin-folding cofactor B OS=Arabidopsis thaliana GN=TFCB PE=1 SV=1
trembl
ID A0A067JQW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22493 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tubulin-folding cofactor b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58152: 26152-33131 , PASA_asmbl_58153: 27373-27559 , PASA_asmbl_58154: 28840-29160 , PASA_asmbl_58155: 29802-31700 , PASA_asmbl_58156: 29756-33133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007875_030 0.0 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
2 Hb_003878_010 0.0731801173 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
3 Hb_002893_050 0.0736512119 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
4 Hb_000610_050 0.0749335234 - - skp1, putative [Ricinus communis]
5 Hb_024071_020 0.07528469 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
6 Hb_001047_240 0.0775557109 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
7 Hb_001140_370 0.0840422387 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
8 Hb_001814_070 0.0865667045 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
9 Hb_000982_090 0.0869730057 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
10 Hb_001221_100 0.0882753992 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
11 Hb_004162_210 0.0909568688 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
12 Hb_004800_230 0.0918425776 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
13 Hb_002289_120 0.0924678745 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
14 Hb_076693_030 0.0937260077 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
15 Hb_124953_020 0.0940483379 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
16 Hb_000342_100 0.0941997085 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
17 Hb_001454_400 0.0952266345 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
18 Hb_005773_060 0.0953605241 - - defender against cell death, putative [Ricinus communis]
19 Hb_128048_010 0.0955075039 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_003918_010 0.0956160704 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007875_030 Hb_007875_030 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_007875_030--Hb_024071_020 Hb_001047_240 Hb_001047_240 Hb_007875_030--Hb_001047_240 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_128048_010 Hb_128048_010 Hb_003878_010--Hb_128048_010 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_002893_050--Hb_000610_050 Hb_002893_050--Hb_024071_020 Hb_002893_050--Hb_001140_370 Hb_000342_100 Hb_000342_100 Hb_002893_050--Hb_000342_100 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_000610_050--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000610_050--Hb_000342_100 Hb_024071_020--Hb_001140_370 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_076693_030 Hb_076693_030 Hb_001047_240--Hb_076693_030 Hb_004784_020 Hb_004784_020 Hb_001047_240--Hb_004784_020 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0252 13.4251 18.9134 28.5649 17.7508 25.4824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1401 43.2157 15.9362 21.676 6.94772

CAGE analysis