Hb_007875_070

Information

Type -
Description -
Location Contig7875: 173951-177438
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID KDP38860.1
description hypothetical protein JCGZ_05017 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067L2Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05017 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58157: 175026-175299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007875_070 0.0 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
2 Hb_008225_080 0.0749620794 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
3 Hb_000976_020 0.1006018676 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_001013_040 0.1029639381 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
5 Hb_000758_030 0.1069240743 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
6 Hb_008080_040 0.1074443083 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
7 Hb_000381_030 0.1131185081 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
8 Hb_006919_010 0.1137734829 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
9 Hb_012019_020 0.1179551152 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
10 Hb_000101_050 0.1255277278 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_000984_080 0.1267058675 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
12 Hb_001331_040 0.1268256966 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
13 Hb_004855_050 0.127855803 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
14 Hb_004463_040 0.1283442528 - - -
15 Hb_000411_060 0.128903684 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_002110_270 0.1309367011 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_000237_150 0.1324463377 - - Epoxide hydrolase 2 [Morus notabilis]
18 Hb_000407_110 0.132978901 - - ripening-induced ACC oxidase [Carica papaya]
19 Hb_001838_050 0.1340341642 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
20 Hb_006006_070 0.1365396295 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007875_070 Hb_007875_070 Hb_008225_080 Hb_008225_080 Hb_007875_070--Hb_008225_080 Hb_000976_020 Hb_000976_020 Hb_007875_070--Hb_000976_020 Hb_001013_040 Hb_001013_040 Hb_007875_070--Hb_001013_040 Hb_000758_030 Hb_000758_030 Hb_007875_070--Hb_000758_030 Hb_008080_040 Hb_008080_040 Hb_007875_070--Hb_008080_040 Hb_000381_030 Hb_000381_030 Hb_007875_070--Hb_000381_030 Hb_008225_080--Hb_000758_030 Hb_008225_080--Hb_000976_020 Hb_000984_080 Hb_000984_080 Hb_008225_080--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_008225_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_008225_080--Hb_006006_070 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_001856_060 Hb_001856_060 Hb_001013_040--Hb_001856_060 Hb_001013_040--Hb_000381_030 Hb_001331_040 Hb_001331_040 Hb_001013_040--Hb_001331_040 Hb_012019_020 Hb_012019_020 Hb_001013_040--Hb_012019_020 Hb_002171_070 Hb_002171_070 Hb_001013_040--Hb_002171_070 Hb_000758_030--Hb_002110_270 Hb_000758_030--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_000758_030--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000758_030--Hb_000539_080 Hb_000327_300 Hb_000327_300 Hb_008080_040--Hb_000327_300 Hb_004586_080 Hb_004586_080 Hb_008080_040--Hb_004586_080 Hb_000407_110 Hb_000407_110 Hb_008080_040--Hb_000407_110 Hb_008080_040--Hb_002965_020 Hb_020902_020 Hb_020902_020 Hb_008080_040--Hb_020902_020 Hb_008080_040--Hb_001357_260 Hb_000381_030--Hb_001331_040 Hb_006949_030 Hb_006949_030 Hb_000381_030--Hb_006949_030 Hb_006938_010 Hb_006938_010 Hb_000381_030--Hb_006938_010 Hb_000010_200 Hb_000010_200 Hb_000381_030--Hb_000010_200 Hb_007894_260 Hb_007894_260 Hb_000381_030--Hb_007894_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.926715 0.298809 0.206679 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0103627 0.0198518 3.21658 0.13287

CAGE analysis