Hb_007878_010

Information

Type -
Description -
Location Contig7878: 31426-40812
Sequence    

Annotation

kegg
ID rcu:RCOM_0881710
description hypothetical protein
nr
ID XP_012074830.1
description PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
swissprot
ID Q6DBA5
description DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana GN=NRPD4 PE=1 SV=2
trembl
ID A0A067KTD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08983 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dna-directed rna polymerases iv and v subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58159: 31436-40807
cDNA
(Sanger)
(ID:Location)		 014_N03.ab1: 31874-40801 , 036_O09.ab1: 31903-40801 , 038_M11.ab1: 31892-40801 , 052_N16.ab1: 31906-40801

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007878_010 0.0 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
2 Hb_161574_020 0.0356463264 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
3 Hb_002641_060 0.0508203251 - - prefoldin subunit, putative [Ricinus communis]
4 Hb_002171_060 0.0638892688 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001278_100 0.0661491013 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
6 Hb_000720_040 0.0712086086 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
7 Hb_000270_310 0.0715525024 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
8 Hb_154948_040 0.0727800927 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
9 Hb_017895_040 0.0737529882 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
10 Hb_014720_120 0.0745589513 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
11 Hb_013575_010 0.0752179737 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
12 Hb_002936_010 0.0762156432 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
13 Hb_008616_050 0.0765527875 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
14 Hb_000390_300 0.0775637264 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_003938_090 0.0785698403 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000510_300 0.0787892814 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
17 Hb_172632_100 0.0795548727 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
18 Hb_000783_010 0.0800355591 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
19 Hb_000976_120 0.0802749507 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
20 Hb_001318_280 0.080452395 - - Protein FAM18B, putative [Ricinus communis]

Gene co-expression network

sample Hb_007878_010 Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_007878_010--Hb_161574_020 Hb_002641_060 Hb_002641_060 Hb_007878_010--Hb_002641_060 Hb_002171_060 Hb_002171_060 Hb_007878_010--Hb_002171_060 Hb_001278_100 Hb_001278_100 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_000270_310 Hb_000270_310 Hb_007878_010--Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_161574_020--Hb_002171_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_161574_020--Hb_001278_100 Hb_002641_060--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_001931_010 Hb_001931_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_000270_310--Hb_002936_010 Hb_000270_310--Hb_164010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6817 23.7287 45.7609 51.2502 30.361 39.8288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.6029 62.6766 30.7811 31.873 25.8178

CAGE analysis