Hb_007881_030

Information

Type -
Description -
Location Contig7881: 24956-25899
Sequence    

Annotation

kegg
ID rcu:RCOM_0797270
description Protein YME1, putative (EC:3.6.4.3)
nr
ID XP_002516427.1
description Protein YME1, putative [Ricinus communis]
swissprot
ID O80983
description ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2
trembl
ID B9RRQ8
description Protein YME1, putative OS=Ricinus communis GN=RCOM_0797270 PE=3 SV=1
Gene Ontology
ID GO:0016020
description atp-dependent zinc metalloprotease ftsh mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58190: 23668-26533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007881_030 0.0 - - Protein YME1, putative [Ricinus communis]
2 Hb_032225_010 0.0795521278 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_003777_320 0.0842997222 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
4 Hb_144528_010 0.0882215879 - - type II inositol 5-phosphatase, putative [Ricinus communis]
5 Hb_000635_250 0.0947901885 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
6 Hb_001538_130 0.0971233024 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000092_170 0.1015402859 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
8 Hb_000696_330 0.1060937251 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
9 Hb_002585_020 0.1065545963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
10 Hb_002835_080 0.107246966 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
11 Hb_110291_010 0.1073737595 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002182_080 0.1110298311 - - 3-5 exonuclease, putative [Ricinus communis]
13 Hb_009218_010 0.1119295566 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
14 Hb_000032_520 0.1132700409 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
15 Hb_001638_170 0.1137646693 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
16 Hb_004143_060 0.1138320853 - - DNA binding protein, putative [Ricinus communis]
17 Hb_011485_070 0.1152300913 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_148025_010 0.1153466651 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
19 Hb_000035_320 0.1164882567 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
20 Hb_001168_020 0.1170624754 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]

Gene co-expression network

sample Hb_007881_030 Hb_007881_030 Hb_032225_010 Hb_032225_010 Hb_007881_030--Hb_032225_010 Hb_003777_320 Hb_003777_320 Hb_007881_030--Hb_003777_320 Hb_144528_010 Hb_144528_010 Hb_007881_030--Hb_144528_010 Hb_000635_250 Hb_000635_250 Hb_007881_030--Hb_000635_250 Hb_001538_130 Hb_001538_130 Hb_007881_030--Hb_001538_130 Hb_000092_170 Hb_000092_170 Hb_007881_030--Hb_000092_170 Hb_007101_300 Hb_007101_300 Hb_032225_010--Hb_007101_300 Hb_003038_210 Hb_003038_210 Hb_032225_010--Hb_003038_210 Hb_032225_010--Hb_000092_170 Hb_000696_330 Hb_000696_330 Hb_032225_010--Hb_000696_330 Hb_002701_020 Hb_002701_020 Hb_032225_010--Hb_002701_020 Hb_005188_080 Hb_005188_080 Hb_003777_320--Hb_005188_080 Hb_001168_020 Hb_001168_020 Hb_003777_320--Hb_001168_020 Hb_003847_030 Hb_003847_030 Hb_003777_320--Hb_003847_030 Hb_003777_320--Hb_000696_330 Hb_000504_070 Hb_000504_070 Hb_003777_320--Hb_000504_070 Hb_005269_040 Hb_005269_040 Hb_144528_010--Hb_005269_040 Hb_144528_010--Hb_001538_130 Hb_005731_120 Hb_005731_120 Hb_144528_010--Hb_005731_120 Hb_005914_080 Hb_005914_080 Hb_144528_010--Hb_005914_080 Hb_001287_080 Hb_001287_080 Hb_144528_010--Hb_001287_080 Hb_001258_040 Hb_001258_040 Hb_000635_250--Hb_001258_040 Hb_001545_120 Hb_001545_120 Hb_000635_250--Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_000635_250--Hb_002044_080 Hb_044728_010 Hb_044728_010 Hb_000635_250--Hb_044728_010 Hb_002725_120 Hb_002725_120 Hb_000635_250--Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_000635_250--Hb_009767_110 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_003525_010 Hb_003525_010 Hb_000092_170--Hb_003525_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_000092_170--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5765 9.52359 2.86786 9.14678 5.50286 16.7843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94165 14.9165 11.0967 7.62759 9.27924

CAGE analysis