Hb_007885_010

Information

Type -
Description -
Location Contig7885: 2018-11197
Sequence    

Annotation

kegg
ID tcc:TCM_043464
description 60S ribosomal protein L24-1 isoform 1
nr
ID XP_007010132.1
description 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
swissprot
ID Q9FUL4
description 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1
trembl
ID A0A061FQJ2
description 60S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58191: 1759-4066
cDNA
(Sanger)
(ID:Location)		 010_E09.ab1: 1863-4043 , 019_O09.ab1: 1844-4044 , 035_M06.ab1: 1807-4043 , 037_K14.ab1: 1878-2653 , 046_E07.ab1: 1864-4043 , 047_E20.ab1: 1839-4044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_010 0.0 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
2 Hb_000809_060 0.1174885516 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
3 Hb_001754_140 0.1204932684 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
4 Hb_000159_070 0.1222600833 - - JHL03K20.4 [Jatropha curcas]
5 Hb_001512_050 0.1237651305 - - copine, putative [Ricinus communis]
6 Hb_003058_080 0.1251886914 - - Chaperonin 10 isoform 1 [Theobroma cacao]
7 Hb_000212_210 0.1295002165 - - unnamed protein product [Coffea canephora]
8 Hb_000699_040 0.1326930347 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
9 Hb_027472_160 0.1339231577 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_076693_040 0.1362358894 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
11 Hb_004755_030 0.1395115085 - - EG964 [Manihot glaziovii]
12 Hb_000451_060 0.1416050694 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
13 Hb_002081_030 0.1422231146 - - unnamed protein product [Coffea canephora]
14 Hb_000191_030 0.1422468586 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
15 Hb_019516_100 0.143383512 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_116349_110 0.1438810632 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
17 Hb_000272_050 0.1449532985 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
18 Hb_002588_010 0.1460027731 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
19 Hb_009476_020 0.14613189 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_000172_420 0.146330211 - - 60S ribosomal protein L30, putative [Ricinus communis]

Gene co-expression network

sample Hb_007885_010 Hb_007885_010 Hb_000809_060 Hb_000809_060 Hb_007885_010--Hb_000809_060 Hb_001754_140 Hb_001754_140 Hb_007885_010--Hb_001754_140 Hb_000159_070 Hb_000159_070 Hb_007885_010--Hb_000159_070 Hb_001512_050 Hb_001512_050 Hb_007885_010--Hb_001512_050 Hb_003058_080 Hb_003058_080 Hb_007885_010--Hb_003058_080 Hb_000212_210 Hb_000212_210 Hb_007885_010--Hb_000212_210 Hb_002081_030 Hb_002081_030 Hb_000809_060--Hb_002081_030 Hb_009778_040 Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_001754_140--Hb_003058_080 Hb_001754_140--Hb_000212_210 Hb_001754_140--Hb_001512_050 Hb_006028_020 Hb_006028_020 Hb_001754_140--Hb_006028_020 Hb_001754_140--Hb_000809_060 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_007245_080 Hb_007245_080 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_002588_010 Hb_002588_010 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1654 14.6817 38.178 30.4364 14.5113 18.3842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.4936 163.883 24.7027 8.92065 6.97666

CAGE analysis