Hb_007885_020

Information

Type -
Description -
Location Contig7885: 15745-37074
Sequence    

Annotation

kegg
ID bdi:100841899
description uncharacterized LOC100841899
nr
ID KDP38219.1
description hypothetical protein JCGZ_04862 [Jatropha curcas]
swissprot
ID Q02200
description Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A0D9X2X2
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0005576
description lignin-forming anionic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58194: 15944-17695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_020 0.0 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
2 Hb_004346_010 0.1868005298 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003688_210 0.2127821303 - - replication factor A 1, rfa1, putative [Ricinus communis]
4 Hb_004545_070 0.2142721206 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
5 Hb_024758_030 0.2234158816 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
6 Hb_009767_050 0.2347575456 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
7 Hb_000668_050 0.2370870802 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_001916_030 0.2471654383 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
9 Hb_172426_050 0.2514298308 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
10 Hb_000186_290 0.2520855259 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
11 Hb_007684_010 0.2526031729 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000920_160 0.2536544478 - - annexin [Manihot esculenta]
13 Hb_006788_040 0.255458788 - - calmodulin, putative [Ricinus communis]
14 Hb_000011_370 0.2586617764 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
15 Hb_007100_020 0.2594930174 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
16 Hb_002759_070 0.2596574479 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
17 Hb_006978_020 0.2605057462 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_002339_030 0.2617142631 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_001922_030 0.2628610929 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
20 Hb_116190_010 0.2633801699 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]

Gene co-expression network

sample Hb_007885_020 Hb_007885_020 Hb_004346_010 Hb_004346_010 Hb_007885_020--Hb_004346_010 Hb_003688_210 Hb_003688_210 Hb_007885_020--Hb_003688_210 Hb_004545_070 Hb_004545_070 Hb_007885_020--Hb_004545_070 Hb_024758_030 Hb_024758_030 Hb_007885_020--Hb_024758_030 Hb_009767_050 Hb_009767_050 Hb_007885_020--Hb_009767_050 Hb_000668_050 Hb_000668_050 Hb_007885_020--Hb_000668_050 Hb_000186_290 Hb_000186_290 Hb_004346_010--Hb_000186_290 Hb_001916_030 Hb_001916_030 Hb_004346_010--Hb_001916_030 Hb_004346_010--Hb_004545_070 Hb_009545_030 Hb_009545_030 Hb_004346_010--Hb_009545_030 Hb_078081_010 Hb_078081_010 Hb_004346_010--Hb_078081_010 Hb_003688_210--Hb_004545_070 Hb_000032_460 Hb_000032_460 Hb_003688_210--Hb_000032_460 Hb_002339_030 Hb_002339_030 Hb_003688_210--Hb_002339_030 Hb_002072_040 Hb_002072_040 Hb_003688_210--Hb_002072_040 Hb_005168_020 Hb_005168_020 Hb_003688_210--Hb_005168_020 Hb_003688_210--Hb_000668_050 Hb_008695_150 Hb_008695_150 Hb_004545_070--Hb_008695_150 Hb_004545_070--Hb_009767_050 Hb_013726_010 Hb_013726_010 Hb_004545_070--Hb_013726_010 Hb_000165_200 Hb_000165_200 Hb_004545_070--Hb_000165_200 Hb_000032_250 Hb_000032_250 Hb_004545_070--Hb_000032_250 Hb_004545_070--Hb_002072_040 Hb_004918_010 Hb_004918_010 Hb_024758_030--Hb_004918_010 Hb_000307_040 Hb_000307_040 Hb_024758_030--Hb_000307_040 Hb_000347_100 Hb_000347_100 Hb_024758_030--Hb_000347_100 Hb_017043_040 Hb_017043_040 Hb_024758_030--Hb_017043_040 Hb_000639_010 Hb_000639_010 Hb_024758_030--Hb_000639_010 Hb_002025_380 Hb_002025_380 Hb_009767_050--Hb_002025_380 Hb_002818_170 Hb_002818_170 Hb_009767_050--Hb_002818_170 Hb_009767_050--Hb_002072_040 Hb_002097_180 Hb_002097_180 Hb_009767_050--Hb_002097_180 Hb_003189_010 Hb_003189_010 Hb_009767_050--Hb_003189_010 Hb_006277_030 Hb_006277_030 Hb_009767_050--Hb_006277_030 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_000668_050--Hb_003189_010 Hb_000714_060 Hb_000714_060 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000951_090 Hb_000951_090 Hb_000668_050--Hb_000951_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.114708 0.19708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0594187 0.00935197 0 0.170455 0.0800628

CAGE analysis