Hb_007885_060

Information

Type -
Description -
Location Contig7885: 56177-65580
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12340g
description POPTRDRAFT_817339; replication factor C 40 kDa family protein
nr
ID XP_002304476.1
description replication factor C 40 kDa family protein [Populus trichocarpa]
swissprot
ID Q9CAM7
description Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1
trembl
ID B9GWE8
description Replication factor C 40 kDa family protein OS=Populus trichocarpa GN=POPTR_0003s12340g PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58195: 56147-57281 , PASA_asmbl_58196: 64506-65288
cDNA
(Sanger)
(ID:Location)		 047_L12.ab1: 56147-56993

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_060 0.0 - - replication factor C 40 kDa family protein [Populus trichocarpa]
2 Hb_002820_050 0.0787106435 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
3 Hb_000181_090 0.0789506862 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
4 Hb_002311_180 0.0801176778 - - drought-responsive family protein [Populus trichocarpa]
5 Hb_004453_130 0.0880856386 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
6 Hb_002299_030 0.0892059675 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007533_010 0.0976841463 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
8 Hb_000424_060 0.1011861505 - - PREDICTED: myosin-15 [Jatropha curcas]
9 Hb_012395_230 0.1021948802 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_005730_120 0.1023695879 - - PREDICTED: protein WHI4 [Jatropha curcas]
11 Hb_022132_050 0.1028579367 - - GTP binding protein, putative [Ricinus communis]
12 Hb_021576_100 0.1036556515 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000005_220 0.1043807193 - - DNA ligase 1, partial [Glycine soja]
14 Hb_003848_040 0.105995094 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
15 Hb_000010_110 0.1084938626 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
16 Hb_002876_240 0.108939203 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
17 Hb_000422_030 0.1091979843 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
18 Hb_000649_230 0.1092213209 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
19 Hb_011909_120 0.1093359164 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
20 Hb_000053_110 0.1096292714 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007885_060 Hb_007885_060 Hb_002820_050 Hb_002820_050 Hb_007885_060--Hb_002820_050 Hb_000181_090 Hb_000181_090 Hb_007885_060--Hb_000181_090 Hb_002311_180 Hb_002311_180 Hb_007885_060--Hb_002311_180 Hb_004453_130 Hb_004453_130 Hb_007885_060--Hb_004453_130 Hb_002299_030 Hb_002299_030 Hb_007885_060--Hb_002299_030 Hb_007533_010 Hb_007533_010 Hb_007885_060--Hb_007533_010 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_002876_240 Hb_002876_240 Hb_002820_050--Hb_002876_240 Hb_000424_060 Hb_000424_060 Hb_000181_090--Hb_000424_060 Hb_000181_090--Hb_007533_010 Hb_000105_050 Hb_000105_050 Hb_000181_090--Hb_000105_050 Hb_002284_150 Hb_002284_150 Hb_000181_090--Hb_002284_150 Hb_000053_110 Hb_000053_110 Hb_000181_090--Hb_000053_110 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_004453_130--Hb_005730_120 Hb_000049_140 Hb_000049_140 Hb_004453_130--Hb_000049_140 Hb_001599_040 Hb_001599_040 Hb_004453_130--Hb_001599_040 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_003638_130 Hb_003638_130 Hb_002299_030--Hb_003638_130 Hb_002686_170 Hb_002686_170 Hb_002299_030--Hb_002686_170 Hb_002524_010 Hb_002524_010 Hb_002299_030--Hb_002524_010 Hb_002299_030--Hb_002311_180 Hb_002299_030--Hb_000181_090 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_007533_010--Hb_000424_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00236 1.81481 3.24686 1.89036 1.72548 2.44022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47671 2.12106 0.991768 1.08234 1.56868

CAGE analysis