Hb_007885_070

Information

Type -
Description -
Location Contig7885: 67012-70497
Sequence    

Annotation

kegg
ID rcu:RCOM_1685450
description cleavage and polyadenylation specificity factor, putative
nr
ID XP_002509740.1
description cleavage and polyadenylation specificity factor, putative [Ricinus communis]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RC56
description Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_1685450 PE=4 SV=1
Gene Ontology
ID GO:0008270
description cleavage and polyadenylation specificity

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58198: 67128-70488 , PASA_asmbl_58199: 67906-68248
cDNA
(Sanger)
(ID:Location)		 038_L07.ab1: 67128-68365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_070 0.0 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
2 Hb_002221_050 0.0541692973 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
3 Hb_000417_160 0.0566664557 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
4 Hb_000529_260 0.0609986927 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
5 Hb_019153_020 0.0634199841 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_000320_380 0.0635227025 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
7 Hb_000424_010 0.0648351095 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_000313_340 0.0650908424 - - DNA repair protein xp-E, putative [Ricinus communis]
9 Hb_147737_010 0.0669267206 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
10 Hb_015026_050 0.0684614541 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_140049_020 0.0704475506 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
12 Hb_175338_020 0.072244225 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_010315_090 0.0742796055 - - suppressor of ty, putative [Ricinus communis]
14 Hb_000107_530 0.0755041484 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_027073_060 0.0771089969 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
16 Hb_000329_130 0.0771531775 - - beta-tubulin cofactor d, putative [Ricinus communis]
17 Hb_033594_020 0.0776826412 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
18 Hb_000035_040 0.079925281 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
19 Hb_002675_040 0.0803868521 - - ran-binding protein, putative [Ricinus communis]
20 Hb_022408_010 0.0804801225 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]

Gene co-expression network

sample Hb_007885_070 Hb_007885_070 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000417_160--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000417_160--Hb_000510_310 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_000417_160--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_000417_160--Hb_000329_130 Hb_000529_260--Hb_000424_010 Hb_000529_260--Hb_019153_020 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_019153_020--Hb_002221_050 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_000320_380--Hb_015026_050 Hb_000320_380--Hb_019153_020 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.3242 60.5529 24.0184 21.4687 101.119 76.1933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0477 17.5469 38.4193 32.8826 28.2623

CAGE analysis