Hb_007885_090

Information

Type -
Description -
Location Contig7885: 72417-75890
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08950g
description POPTRDRAFT_815104; hypothetical protein
nr
ID XP_006368745.1
description hypothetical protein POPTR_0001s08950g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GT28
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08950g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58200: 72259-72499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007885_090 0.0 - - hypothetical protein POPTR_0001s08950g [Populus trichocarpa]
2 Hb_003470_050 0.2044440194 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_002603_010 0.2102999059 - - unnamed protein product [Vitis vinifera]
4 Hb_001251_060 0.2159181068 - - aldo/keto reductase AKR [Manihot esculenta]
5 Hb_000025_400 0.2186533644 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
6 Hb_000334_180 0.2187605989 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
7 Hb_008221_170 0.2243209426 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
8 Hb_000567_350 0.2280147565 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
9 Hb_000649_120 0.2294570224 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_005016_020 0.2301344693 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_000479_110 0.2301686327 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
12 Hb_011310_200 0.2329560291 - - grr1, plant, putative [Ricinus communis]
13 Hb_008468_030 0.2333263574 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_000094_250 0.2366263193 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
15 Hb_165130_010 0.2377410909 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
16 Hb_000062_640 0.2395164221 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
17 Hb_010270_010 0.2407172403 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_000207_290 0.2430003228 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
19 Hb_000220_080 0.244315802 - - kinase, putative [Ricinus communis]
20 Hb_000739_080 0.2457503465 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_007885_090 Hb_007885_090 Hb_003470_050 Hb_003470_050 Hb_007885_090--Hb_003470_050 Hb_002603_010 Hb_002603_010 Hb_007885_090--Hb_002603_010 Hb_001251_060 Hb_001251_060 Hb_007885_090--Hb_001251_060 Hb_000025_400 Hb_000025_400 Hb_007885_090--Hb_000025_400 Hb_000334_180 Hb_000334_180 Hb_007885_090--Hb_000334_180 Hb_008221_170 Hb_008221_170 Hb_007885_090--Hb_008221_170 Hb_000649_120 Hb_000649_120 Hb_003470_050--Hb_000649_120 Hb_002603_040 Hb_002603_040 Hb_003470_050--Hb_002603_040 Hb_000028_340 Hb_000028_340 Hb_003470_050--Hb_000028_340 Hb_000479_110 Hb_000479_110 Hb_003470_050--Hb_000479_110 Hb_000062_640 Hb_000062_640 Hb_003470_050--Hb_000062_640 Hb_000220_080 Hb_000220_080 Hb_003470_050--Hb_000220_080 Hb_017559_010 Hb_017559_010 Hb_002603_010--Hb_017559_010 Hb_000574_370 Hb_000574_370 Hb_002603_010--Hb_000574_370 Hb_000254_010 Hb_000254_010 Hb_002603_010--Hb_000254_010 Hb_002943_010 Hb_002943_010 Hb_002603_010--Hb_002943_010 Hb_000473_030 Hb_000473_030 Hb_002603_010--Hb_000473_030 Hb_033234_010 Hb_033234_010 Hb_002603_010--Hb_033234_010 Hb_002471_140 Hb_002471_140 Hb_001251_060--Hb_002471_140 Hb_011310_200 Hb_011310_200 Hb_001251_060--Hb_011310_200 Hb_000216_020 Hb_000216_020 Hb_001251_060--Hb_000216_020 Hb_000866_090 Hb_000866_090 Hb_001251_060--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_001251_060--Hb_000059_130 Hb_001414_040 Hb_001414_040 Hb_001251_060--Hb_001414_040 Hb_000465_260 Hb_000465_260 Hb_000025_400--Hb_000465_260 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000056_280 Hb_000056_280 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_000566_030 Hb_000566_030 Hb_000334_180--Hb_000566_030 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_002046_020 Hb_002046_020 Hb_008221_170--Hb_002046_020 Hb_002631_200 Hb_002631_200 Hb_008221_170--Hb_002631_200 Hb_001105_160 Hb_001105_160 Hb_008221_170--Hb_001105_160 Hb_000487_380 Hb_000487_380 Hb_008221_170--Hb_000487_380 Hb_002662_050 Hb_002662_050 Hb_008221_170--Hb_002662_050 Hb_007576_200 Hb_007576_200 Hb_008221_170--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382467 0.874375 0.170503 0.816844 0.158418 0.0614367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.404655 0.787249 0.29858

CAGE analysis