Hb_007894_050

Information

Type -
Description -
Location Contig7894: 45582-48636
Sequence    

Annotation

kegg
ID pop:POPTR_0128s00210g
description hypothetical protein
nr
ID XP_012070823.1
description PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
swissprot
ID Q94JQ4
description Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1
trembl
ID A0A067L4X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00886 PE=4 SV=1
Gene Ontology
ID GO:0005739
description endoribonuclease l-psp family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58254: 45506-47998 , PASA_asmbl_58255: 45506-48678
cDNA
(Sanger)
(ID:Location)		 005_E07.ab1: 45506-47998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_050 0.0 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
2 Hb_001073_080 0.0907946075 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
3 Hb_001301_340 0.0935056473 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
4 Hb_003126_130 0.1007801007 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
5 Hb_002872_050 0.1144141656 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
6 Hb_000392_550 0.1146086593 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001377_450 0.1149196486 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_004317_030 0.1158883721 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
9 Hb_001019_150 0.1159541775 - - Acyl-protein thioesterase, putative [Ricinus communis]
10 Hb_000032_370 0.1166596655 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
11 Hb_000429_040 0.1196261805 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
12 Hb_000056_070 0.1232829034 - - -
13 Hb_002540_080 0.1284738001 - - cysteine-type peptidase, putative [Ricinus communis]
14 Hb_001252_220 0.1288290004 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
15 Hb_007827_010 0.1294800981 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
16 Hb_000035_240 0.129994091 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000428_060 0.1308872427 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_000035_270 0.1310186253 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
19 Hb_001114_080 0.1310195075 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
20 Hb_005460_060 0.131875582 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_050 Hb_007894_050 Hb_001073_080 Hb_001073_080 Hb_007894_050--Hb_001073_080 Hb_001301_340 Hb_001301_340 Hb_007894_050--Hb_001301_340 Hb_003126_130 Hb_003126_130 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_000392_550 Hb_000392_550 Hb_007894_050--Hb_000392_550 Hb_001377_450 Hb_001377_450 Hb_007894_050--Hb_001377_450 Hb_000390_090 Hb_000390_090 Hb_001073_080--Hb_000390_090 Hb_001073_080--Hb_001301_340 Hb_001073_080--Hb_001377_450 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_000429_040 Hb_000429_040 Hb_001073_080--Hb_000429_040 Hb_000035_240 Hb_000035_240 Hb_001301_340--Hb_000035_240 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_001301_340--Hb_000392_550 Hb_003126_130--Hb_001377_450 Hb_003126_130--Hb_001073_080 Hb_002909_020 Hb_002909_020 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_001377_450--Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0708 5.04587 50.55 34.1641 6.53056 7.67522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.2949 60.5221 26.0974 22.5573 35.1267

CAGE analysis