Hb_007894_060

Information

Type -
Description -
Location Contig7894: 50333-55252
Sequence    

Annotation

kegg
ID rcu:RCOM_0082100
description cysteine-type peptidase, putative
nr
ID XP_012070824.1
description PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
swissprot
ID Q567B1
description Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
trembl
ID A0A067L3Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00887 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin thioesterase otu1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58256: 50314-55201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_060 0.0 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
2 Hb_007928_030 0.0557608368 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
3 Hb_000538_120 0.0603272446 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
4 Hb_001301_110 0.0731573032 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
5 Hb_002301_150 0.0736723504 - - Drought-responsive family protein [Theobroma cacao]
6 Hb_000136_260 0.0769837902 - - 40S ribosomal protein S5A [Hevea brasiliensis]
7 Hb_000069_720 0.0781287236 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
8 Hb_028396_010 0.0789447053 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
9 Hb_005391_040 0.0796997378 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
10 Hb_001341_150 0.0816040865 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_000948_160 0.0824289518 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
12 Hb_000431_170 0.0831906781 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
13 Hb_001863_430 0.083195819 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
14 Hb_004108_220 0.0836564827 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
15 Hb_000110_250 0.0837811126 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
16 Hb_010098_050 0.084626359 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
17 Hb_005588_060 0.0847070641 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
18 Hb_000465_390 0.0849575377 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
19 Hb_006846_130 0.0859617435 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
20 Hb_000419_020 0.0862092318 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_060 Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_007894_060--Hb_007928_030 Hb_000538_120 Hb_000538_120 Hb_007894_060--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_007894_060--Hb_001301_110 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_000136_260 Hb_000136_260 Hb_007894_060--Hb_000136_260 Hb_000069_720 Hb_000069_720 Hb_007894_060--Hb_000069_720 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_007928_030--Hb_005914_170 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_008013_050 Hb_008013_050 Hb_002301_150--Hb_008013_050 Hb_003502_060 Hb_003502_060 Hb_002301_150--Hb_003502_060 Hb_004108_220 Hb_004108_220 Hb_002301_150--Hb_004108_220 Hb_000030_030 Hb_000030_030 Hb_002301_150--Hb_000030_030 Hb_006846_130 Hb_006846_130 Hb_002301_150--Hb_006846_130 Hb_168978_010 Hb_168978_010 Hb_002301_150--Hb_168978_010 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.6195 25.6333 38.7509 46.474 17.6202 25.2422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3837 73.9673 30.6837 46.8973 29.0792

CAGE analysis