Hb_007894_110

Information

Type -
Description -
Location Contig7894: 94235-100145
Sequence    

Annotation

kegg
ID rcu:RCOM_0584640
description Heat-shock protein 105 kDa, putative (EC:1.3.1.74)
nr
ID XP_002522946.1
description Heat-shock protein 105 kDa, putative [Ricinus communis]
swissprot
ID Q9SAB1
description Heat shock 70 kDa protein 16 OS=Arabidopsis thaliana GN=HSP70-16 PE=2 SV=1
trembl
ID B9SAC7
description Heat-shock protein 105 kDa, putative OS=Ricinus communis GN=RCOM_0584640 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock 70 kda protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58262: 94305-99850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_110 0.0 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
2 Hb_007416_330 0.0605864352 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
3 Hb_001408_140 0.0614462461 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
4 Hb_024621_040 0.0618454979 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
5 Hb_000025_730 0.0705797378 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
6 Hb_003428_010 0.074126271 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_003058_260 0.0748321839 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
8 Hb_004787_050 0.0750199686 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
9 Hb_003494_020 0.0757980662 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
10 Hb_001679_050 0.0763526966 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
11 Hb_000258_160 0.0768000021 - - conserved hypothetical protein [Ricinus communis]
12 Hb_109980_010 0.0779217934 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
13 Hb_001195_530 0.078201302 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011063_050 0.0791761259 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
15 Hb_000340_530 0.0792506619 - - hypothetical protein VITISV_016664 [Vitis vinifera]
16 Hb_093458_040 0.0794259585 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_009911_030 0.0794994258 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
18 Hb_002849_130 0.0797102597 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
19 Hb_000088_170 0.0797144561 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
20 Hb_002205_250 0.0798714988 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_110 Hb_007894_110 Hb_007416_330 Hb_007416_330 Hb_007894_110--Hb_007416_330 Hb_001408_140 Hb_001408_140 Hb_007894_110--Hb_001408_140 Hb_024621_040 Hb_024621_040 Hb_007894_110--Hb_024621_040 Hb_000025_730 Hb_000025_730 Hb_007894_110--Hb_000025_730 Hb_003428_010 Hb_003428_010 Hb_007894_110--Hb_003428_010 Hb_003058_260 Hb_003058_260 Hb_007894_110--Hb_003058_260 Hb_006017_010 Hb_006017_010 Hb_007416_330--Hb_006017_010 Hb_001221_080 Hb_001221_080 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_007416_330--Hb_001408_140 Hb_114310_090 Hb_114310_090 Hb_007416_330--Hb_114310_090 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_007163_120 Hb_007163_120 Hb_024621_040--Hb_007163_120 Hb_024621_040--Hb_003464_090 Hb_002028_210 Hb_002028_210 Hb_024621_040--Hb_002028_210 Hb_024621_040--Hb_000025_730 Hb_024621_040--Hb_001195_530 Hb_002073_200 Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58276 7.70663 7.64506 8.42063 7.49878 6.08892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00261 7.48206 9.33618 7.03412 7.51515

CAGE analysis