Hb_007894_120

Information

Type -
Description -
Location Contig7894: 103781-107465
Sequence    

Annotation

kegg
ID rcu:RCOM_0584650
description 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (EC:2.3.1.51)
nr
ID XP_012070810.1
description PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
swissprot
ID Q42670
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cocos nucifera PE=1 SV=1
trembl
ID A0A067KSK2
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Jatropha curcas GN=JCGZ_00879 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 1-acyl-sn-glycerol-3-phosphate acyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58263: 103898-107504 , PASA_asmbl_58264: 103921-107150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_120 0.0 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
2 Hb_017491_010 0.0756979953 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
3 Hb_006970_170 0.0766699498 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_000500_230 0.0786727776 - - hypothetical protein RCOM_0634810 [Ricinus communis]
5 Hb_044653_050 0.080727792 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
6 Hb_000260_480 0.0963927422 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
7 Hb_000010_370 0.0999664635 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
8 Hb_002871_110 0.1006687862 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
9 Hb_000990_040 0.1010869236 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
10 Hb_142026_010 0.1040915633 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
11 Hb_004228_070 0.1064122437 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
12 Hb_004611_050 0.1070084509 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
13 Hb_003454_050 0.1088549181 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
14 Hb_106089_010 0.1091887627 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_030982_050 0.1132294276 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
16 Hb_000365_180 0.1152240419 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
17 Hb_000260_410 0.115461606 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
18 Hb_008749_010 0.1165410577 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
19 Hb_000163_180 0.1179264783 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
20 Hb_119066_010 0.1191956009 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_120 Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_007894_120--Hb_017491_010 Hb_006970_170 Hb_006970_170 Hb_007894_120--Hb_006970_170 Hb_000500_230 Hb_000500_230 Hb_007894_120--Hb_000500_230 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_000260_480 Hb_000260_480 Hb_007894_120--Hb_000260_480 Hb_000010_370 Hb_000010_370 Hb_007894_120--Hb_000010_370 Hb_017491_010--Hb_044653_050 Hb_003071_050 Hb_003071_050 Hb_017491_010--Hb_003071_050 Hb_000260_410 Hb_000260_410 Hb_017491_010--Hb_000260_410 Hb_017491_010--Hb_000500_230 Hb_000818_090 Hb_000818_090 Hb_017491_010--Hb_000818_090 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_006970_170--Hb_000500_230 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_000500_230--Hb_000010_370 Hb_000500_230--Hb_000260_480 Hb_000500_230--Hb_002871_110 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_000260_480--Hb_000010_370 Hb_000260_480--Hb_006970_170 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000025_590 Hb_000025_590 Hb_000260_480--Hb_000025_590 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_002871_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0539466 28.9763 37.8635 29.0777 0.027079 0.182176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329486 0.0777627 0 10.136 28.3587

CAGE analysis