Hb_007894_140

Information

Type -
Description -
Location Contig7894: 114506-121946
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14180g
description POPTRDRAFT_569130; hypothetical protein
nr
ID XP_012070806.1
description PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
swissprot
ID Q94AM9
description Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana GN=CID4 PE=2 SV=1
trembl
ID A0A067L3P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00877 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58270: 114677-118178 , PASA_asmbl_58271: 121641-121875 , PASA_asmbl_58272: 122929-123050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_140 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
2 Hb_033153_050 0.0616496683 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
3 Hb_007590_080 0.0648814572 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
4 Hb_007218_080 0.0691728785 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
5 Hb_001862_190 0.0730318822 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
6 Hb_006663_100 0.0752768717 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
7 Hb_007336_020 0.0761836806 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
8 Hb_001936_060 0.0801786444 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
9 Hb_000879_140 0.0803826605 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
10 Hb_002030_030 0.081212848 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_004310_130 0.0823696463 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
12 Hb_004812_010 0.0826809486 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
13 Hb_076787_010 0.0830628907 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
14 Hb_006922_100 0.0838062159 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
15 Hb_004310_030 0.0838227784 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
16 Hb_000300_280 0.0843427984 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_000009_170 0.0843662012 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
18 Hb_150360_030 0.0849776853 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
19 Hb_000134_090 0.0850467828 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
20 Hb_005662_030 0.0857024042 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_007894_140 Hb_007894_140 Hb_033153_050 Hb_033153_050 Hb_007894_140--Hb_033153_050 Hb_007590_080 Hb_007590_080 Hb_007894_140--Hb_007590_080 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_001862_190 Hb_001862_190 Hb_007894_140--Hb_001862_190 Hb_006663_100 Hb_006663_100 Hb_007894_140--Hb_006663_100 Hb_007336_020 Hb_007336_020 Hb_007894_140--Hb_007336_020 Hb_033153_050--Hb_001862_190 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_001635_170 Hb_001635_170 Hb_033153_050--Hb_001635_170 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_022137_060 Hb_022137_060 Hb_006663_100--Hb_022137_060 Hb_003602_040 Hb_003602_040 Hb_006663_100--Hb_003602_040 Hb_012760_170 Hb_012760_170 Hb_006663_100--Hb_012760_170 Hb_006663_100--Hb_007590_080 Hb_001329_230 Hb_001329_230 Hb_006663_100--Hb_001329_230 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_007336_020--Hb_001369_180 Hb_007336_020--Hb_008253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1055 6.00346 3.92506 5.44461 11.8797 12.7829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1651 8.18779 8.05035 6.88611 4.46687

CAGE analysis