Hb_007894_190

Information

Type -
Description -
Location Contig7894: 142861-151498
Sequence    

Annotation

kegg
ID rcu:RCOM_0585680
description hypothetical protein
nr
ID XP_012070792.1
description PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00862 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58283: 143034-151356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_190 0.0 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
2 Hb_164926_010 0.1030333811 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
3 Hb_000224_220 0.1172209131 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
4 Hb_000803_220 0.119544768 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
5 Hb_001689_050 0.1249934158 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
6 Hb_000009_020 0.1276244459 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
7 Hb_150651_020 0.1286766262 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_001953_100 0.1291666897 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
9 Hb_005618_150 0.1298731289 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
10 Hb_000056_310 0.1318137318 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
11 Hb_002005_040 0.1338934606 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003683_030 0.1365459231 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_000906_070 0.1373653072 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
14 Hb_004635_070 0.1373840751 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
15 Hb_002783_070 0.137540845 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
16 Hb_004837_210 0.1386112294 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
17 Hb_000281_070 0.141077701 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
18 Hb_000042_050 0.1436469666 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
19 Hb_000302_190 0.1443363966 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
20 Hb_001001_120 0.1451903873 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007894_190 Hb_007894_190 Hb_164926_010 Hb_164926_010 Hb_007894_190--Hb_164926_010 Hb_000224_220 Hb_000224_220 Hb_007894_190--Hb_000224_220 Hb_000803_220 Hb_000803_220 Hb_007894_190--Hb_000803_220 Hb_001689_050 Hb_001689_050 Hb_007894_190--Hb_001689_050 Hb_000009_020 Hb_000009_020 Hb_007894_190--Hb_000009_020 Hb_150651_020 Hb_150651_020 Hb_007894_190--Hb_150651_020 Hb_164926_010--Hb_000803_220 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_005618_150 Hb_005618_150 Hb_164926_010--Hb_005618_150 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_007576_180 Hb_007576_180 Hb_164926_010--Hb_007576_180 Hb_000302_190 Hb_000302_190 Hb_000224_220--Hb_000302_190 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_001279_090 Hb_001279_090 Hb_000224_220--Hb_001279_090 Hb_000803_220--Hb_007576_180 Hb_010984_010 Hb_010984_010 Hb_000803_220--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_000803_220--Hb_018043_020 Hb_001250_040 Hb_001250_040 Hb_001689_050--Hb_001250_040 Hb_003683_030 Hb_003683_030 Hb_001689_050--Hb_003683_030 Hb_007594_080 Hb_007594_080 Hb_001689_050--Hb_007594_080 Hb_003894_060 Hb_003894_060 Hb_001689_050--Hb_003894_060 Hb_001689_050--Hb_004837_210 Hb_001953_100 Hb_001953_100 Hb_001689_050--Hb_001953_100 Hb_000009_020--Hb_001953_100 Hb_000056_310 Hb_000056_310 Hb_000009_020--Hb_000056_310 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_000035_210 Hb_000035_210 Hb_000009_020--Hb_000035_210 Hb_000009_020--Hb_003683_030 Hb_000009_020--Hb_004837_210 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35263 10.7977 44.0271 16.472 13.1709 10.6255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95733 1.18074 2.69575 12.2302 53.213

CAGE analysis