Hb_007894_220

Information

Type -
Description -
Location Contig7894: 157434-162523
Sequence    

Annotation

kegg
ID rcu:RCOM_0585730
description transporter, putative
nr
ID XP_012070788.1
description PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
swissprot
ID Q8RWQ5
description Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1
trembl
ID B9SAF5
description Transporter, putative OS=Ricinus communis GN=RCOM_0585730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58286: 159983-160877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_220 0.0 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
2 Hb_000296_080 0.1040380692 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
3 Hb_002518_120 0.1332421911 - - hypothetical protein RCOM_0731250 [Ricinus communis]
4 Hb_001427_040 0.1394165776 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
5 Hb_000012_160 0.1446844485 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
6 Hb_032258_010 0.1466192052 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
7 Hb_002282_070 0.1499653172 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
8 Hb_002685_060 0.1504003858 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_005282_020 0.1515658586 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
10 Hb_003777_020 0.1537680577 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
11 Hb_001117_200 0.1591820411 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
12 Hb_000754_050 0.1607414002 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_005588_110 0.1632587508 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
14 Hb_016461_030 0.1637785608 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_006637_080 0.165032009 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
16 Hb_002027_410 0.1678003685 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
17 Hb_093458_060 0.1726342446 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
18 Hb_000928_010 0.1759472951 - - Cell division protein ftsZ, putative [Ricinus communis]
19 Hb_000028_110 0.1785517175 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
20 Hb_003878_080 0.1802948343 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_220 Hb_007894_220 Hb_000296_080 Hb_000296_080 Hb_007894_220--Hb_000296_080 Hb_002518_120 Hb_002518_120 Hb_007894_220--Hb_002518_120 Hb_001427_040 Hb_001427_040 Hb_007894_220--Hb_001427_040 Hb_000012_160 Hb_000012_160 Hb_007894_220--Hb_000012_160 Hb_032258_010 Hb_032258_010 Hb_007894_220--Hb_032258_010 Hb_002282_070 Hb_002282_070 Hb_007894_220--Hb_002282_070 Hb_005588_110 Hb_005588_110 Hb_000296_080--Hb_005588_110 Hb_006637_080 Hb_006637_080 Hb_000296_080--Hb_006637_080 Hb_000754_050 Hb_000754_050 Hb_000296_080--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_000296_080--Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_000296_080--Hb_003427_080 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_001427_040--Hb_002282_070 Hb_000220_210 Hb_000220_210 Hb_001427_040--Hb_000220_210 Hb_016461_030 Hb_016461_030 Hb_001427_040--Hb_016461_030 Hb_002542_160 Hb_002542_160 Hb_001427_040--Hb_002542_160 Hb_000345_370 Hb_000345_370 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190 Hb_005282_020 Hb_005282_020 Hb_000012_160--Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_000012_160--Hb_003544_010 Hb_000012_160--Hb_002518_120 Hb_002685_060 Hb_002685_060 Hb_000012_160--Hb_002685_060 Hb_000012_160--Hb_002282_070 Hb_032258_010--Hb_001427_040 Hb_032258_010--Hb_002282_070 Hb_032258_010--Hb_000220_210 Hb_032258_010--Hb_002542_160 Hb_155832_010 Hb_155832_010 Hb_032258_010--Hb_155832_010 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.73573 0.132103 1.64408 0.47507 1.56421 1.20478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32028 0.851517 0.872831 1.2056 6.23327

CAGE analysis