Hb_007894_230

Information

Type -
Description -
Location Contig7894: 166656-168075
Sequence    

Annotation

kegg
ID rcu:RCOM_0171050
description 30S ribosomal protein S14, putative
nr
ID XP_002532491.1
description 30S ribosomal protein S14, putative [Ricinus communis]
swissprot
ID P05716
description Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2
trembl
ID B9T2M2
description 30S ribosomal protein S14, putative OS=Ricinus communis GN=RCOM_0171050 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58287: 166217-167588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_230 0.0 - - 30S ribosomal protein S14, putative [Ricinus communis]
2 Hb_002078_260 0.0782811819 - - unknown [Populus trichocarpa]
3 Hb_080601_020 0.1060320315 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
4 Hb_001935_150 0.1073307912 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
5 Hb_001571_110 0.1125022478 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
6 Hb_001220_010 0.1186930081 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
7 Hb_005694_020 0.121953424 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
8 Hb_132180_010 0.1247247094 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
9 Hb_001163_040 0.1307901735 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
10 Hb_029142_070 0.1350761763 - - -
11 Hb_041205_010 0.1368211703 - - conserved hypothetical protein [Ricinus communis]
12 Hb_082006_010 0.1391367066 - - conserved hypothetical protein [Ricinus communis]
13 Hb_030982_020 0.1421616568 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
14 Hb_001754_070 0.1438345079 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
15 Hb_000710_070 0.144787562 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
16 Hb_000326_090 0.1455850691 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
17 Hb_172706_030 0.1465510837 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
18 Hb_002631_260 0.1491821308 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
19 Hb_002259_160 0.1514368479 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
20 Hb_014834_030 0.1515564245 - - -

Gene co-expression network

sample Hb_007894_230 Hb_007894_230 Hb_002078_260 Hb_002078_260 Hb_007894_230--Hb_002078_260 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_080601_020--Hb_001220_010 Hb_000710_070 Hb_000710_070 Hb_080601_020--Hb_000710_070 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_000097_010 Hb_000097_010 Hb_001571_110--Hb_000097_010 Hb_014834_040 Hb_014834_040 Hb_001571_110--Hb_014834_040 Hb_140543_010 Hb_140543_010 Hb_001571_110--Hb_140543_010 Hb_001571_110--Hb_002078_260 Hb_001571_110--Hb_001935_150 Hb_001233_020 Hb_001233_020 Hb_001220_010--Hb_001233_020 Hb_001220_010--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_001220_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001220_010--Hb_004669_030 Hb_005694_020--Hb_082006_010 Hb_041205_010 Hb_041205_010 Hb_005694_020--Hb_041205_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25119 5.23555 5.51737 70.9874 5.28925 52.8772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.7875 78.4493 29.5032 18.5872 16.2586

CAGE analysis