Hb_007894_250

Information

Type -
Description -
Location Contig7894: 168804-169633
Sequence    

Annotation

kegg
ID rcu:RCOM_0586410
description polygalacturonase, putative
nr
ID KDP46064.1
description hypothetical protein JCGZ_06575 [Jatropha curcas]
swissprot
ID Q0JEP3
description BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2
trembl
ID A0A067LNK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06575 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_250 0.0 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
2 Hb_000056_330 0.1204305714 - - unnamed protein product [Vitis vinifera]
3 Hb_000926_130 0.1484918348 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_003096_050 0.1581403979 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000975_150 0.1955460145 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
6 Hb_001190_060 0.1962276743 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
7 Hb_007072_020 0.2082783869 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
8 Hb_000140_160 0.2229504248 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
9 Hb_000500_110 0.2361988172 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_000816_120 0.2493214889 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
11 Hb_003992_250 0.2529707852 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
12 Hb_004800_170 0.2530447557 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
13 Hb_007520_040 0.2533139701 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
14 Hb_024621_030 0.256808715 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
15 Hb_001045_050 0.2569492204 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
16 Hb_000445_450 0.2700884703 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_002918_230 0.2731395712 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
18 Hb_006355_030 0.2794881112 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
19 Hb_003636_070 0.2854674017 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002311_240 0.2915305339 - - hypothetical protein JCGZ_18937 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_250 Hb_007894_250 Hb_000056_330 Hb_000056_330 Hb_007894_250--Hb_000056_330 Hb_000926_130 Hb_000926_130 Hb_007894_250--Hb_000926_130 Hb_003096_050 Hb_003096_050 Hb_007894_250--Hb_003096_050 Hb_000975_150 Hb_000975_150 Hb_007894_250--Hb_000975_150 Hb_001190_060 Hb_001190_060 Hb_007894_250--Hb_001190_060 Hb_007072_020 Hb_007072_020 Hb_007894_250--Hb_007072_020 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_003096_050 Hb_000056_330--Hb_001190_060 Hb_000056_330--Hb_007072_020 Hb_000056_330--Hb_000975_150 Hb_000926_130--Hb_007072_020 Hb_000500_110 Hb_000500_110 Hb_000926_130--Hb_000500_110 Hb_000926_130--Hb_003096_050 Hb_000926_130--Hb_001190_060 Hb_003096_050--Hb_001190_060 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_003096_050--Hb_000975_150 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_000975_150--Hb_001190_060 Hb_001190_060--Hb_000816_120 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240 Hb_007072_020--Hb_000500_110 Hb_007520_040 Hb_007520_040 Hb_007072_020--Hb_007520_040 Hb_006355_030 Hb_006355_030 Hb_007072_020--Hb_006355_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0493376 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 0.351354 0.152015 1.8451 0

CAGE analysis