Hb_007897_040

Information

Type -
Description -
Location Contig7897: 116412-119774
Sequence    

Annotation

kegg
ID rcu:RCOM_0227620
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002529567.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID B9SU98
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0227620 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007897_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_007320_040 0.0950884432 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_002966_030 0.1033240243 - - conserved hypothetical protein [Ricinus communis]
4 Hb_177880_010 0.1037408131 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
5 Hb_004834_020 0.1141583899 - - major allergen Pru ar 1-like [Jatropha curcas]
6 Hb_002747_010 0.1167461939 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
7 Hb_126535_010 0.1224908791 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
8 Hb_153457_010 0.1235780524 - - Miraculin precursor, putative [Ricinus communis]
9 Hb_175167_020 0.126452314 - - conserved hypothetical protein [Ricinus communis]
10 Hb_050898_020 0.1284361637 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
11 Hb_124247_030 0.134764087 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
12 Hb_001053_010 0.137266649 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
13 Hb_000772_070 0.1389920345 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
14 Hb_028008_010 0.1392256852 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_012532_020 0.1392864475 - - Isoflavone reductase, putative [Ricinus communis]
16 Hb_124625_010 0.1411400872 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
17 Hb_012779_010 0.1470889428 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_035583_010 0.1538010994 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_005614_040 0.156338821 - - unnamed protein product [Coffea canephora]
20 Hb_000021_090 0.1569458422 - - -

Gene co-expression network

sample Hb_007897_040 Hb_007897_040 Hb_007320_040 Hb_007320_040 Hb_007897_040--Hb_007320_040 Hb_002966_030 Hb_002966_030 Hb_007897_040--Hb_002966_030 Hb_177880_010 Hb_177880_010 Hb_007897_040--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_007897_040--Hb_004834_020 Hb_002747_010 Hb_002747_010 Hb_007897_040--Hb_002747_010 Hb_126535_010 Hb_126535_010 Hb_007897_040--Hb_126535_010 Hb_007320_040--Hb_177880_010 Hb_007320_040--Hb_004834_020 Hb_007320_040--Hb_002966_030 Hb_007320_040--Hb_126535_010 Hb_124247_030 Hb_124247_030 Hb_007320_040--Hb_124247_030 Hb_007320_040--Hb_002747_010 Hb_002966_030--Hb_002747_010 Hb_153457_010 Hb_153457_010 Hb_002966_030--Hb_153457_010 Hb_175167_020 Hb_175167_020 Hb_002966_030--Hb_175167_020 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010 Hb_002966_030--Hb_177880_010 Hb_177880_010--Hb_004834_020 Hb_177880_010--Hb_126535_010 Hb_177880_010--Hb_124247_030 Hb_177880_010--Hb_175167_020 Hb_004834_020--Hb_126535_010 Hb_004834_020--Hb_124247_030 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_002747_010--Hb_153457_010 Hb_002747_010--Hb_012779_010 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_124247_030 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0996854 0.219085 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376081 0 0 1.85853 0

CAGE analysis