Hb_007904_090

Information

Type -
Description -
Location Contig7904: 54786-55538
Sequence    

Annotation

kegg
ID vvi:100261196
description uncharacterized LOC100261196
nr
ID XP_002282020.1
description PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6GVK0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00200 PE=4 SV=1
Gene Ontology
ID GO:0005576
description s-adenosylmethionine-dependent methyltransferase domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_090 0.0 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
2 Hb_000376_160 0.0976092927 - - -
3 Hb_011431_010 0.174272624 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_068804_150 0.1833495325 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002685_180 0.1894593303 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_000175_040 0.2104432199 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
7 Hb_008078_030 0.2144900622 - - -
8 Hb_000922_180 0.2153954873 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
9 Hb_019033_010 0.2170516878 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
10 Hb_127008_010 0.222356144 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
11 Hb_003371_180 0.2268261697 - - -
12 Hb_002893_120 0.2310861737 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
13 Hb_000788_130 0.23155029 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
14 Hb_000699_110 0.2317805404 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
15 Hb_000438_170 0.2346121229 - - -
16 Hb_000453_210 0.2349669625 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
17 Hb_000445_330 0.2351151195 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001143_010 0.2358170696 - - -
19 Hb_005545_030 0.236966984 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
20 Hb_000224_200 0.2443036848 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_090 Hb_007904_090 Hb_000376_160 Hb_000376_160 Hb_007904_090--Hb_000376_160 Hb_011431_010 Hb_011431_010 Hb_007904_090--Hb_011431_010 Hb_068804_150 Hb_068804_150 Hb_007904_090--Hb_068804_150 Hb_002685_180 Hb_002685_180 Hb_007904_090--Hb_002685_180 Hb_000175_040 Hb_000175_040 Hb_007904_090--Hb_000175_040 Hb_008078_030 Hb_008078_030 Hb_007904_090--Hb_008078_030 Hb_000376_160--Hb_011431_010 Hb_000438_170 Hb_000438_170 Hb_000376_160--Hb_000438_170 Hb_000376_160--Hb_008078_030 Hb_127008_010 Hb_127008_010 Hb_000376_160--Hb_127008_010 Hb_000376_160--Hb_002685_180 Hb_011431_010--Hb_000438_170 Hb_011431_010--Hb_008078_030 Hb_000710_010 Hb_000710_010 Hb_011431_010--Hb_000710_010 Hb_018599_010 Hb_018599_010 Hb_011431_010--Hb_018599_010 Hb_029921_010 Hb_029921_010 Hb_068804_150--Hb_029921_010 Hb_000390_200 Hb_000390_200 Hb_068804_150--Hb_000390_200 Hb_005271_170 Hb_005271_170 Hb_068804_150--Hb_005271_170 Hb_019033_010 Hb_019033_010 Hb_068804_150--Hb_019033_010 Hb_000699_110 Hb_000699_110 Hb_068804_150--Hb_000699_110 Hb_000065_080 Hb_000065_080 Hb_068804_150--Hb_000065_080 Hb_000453_210 Hb_000453_210 Hb_002685_180--Hb_000453_210 Hb_001495_060 Hb_001495_060 Hb_002685_180--Hb_001495_060 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_002685_180--Hb_019033_010 Hb_003057_130 Hb_003057_130 Hb_000175_040--Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_000175_040--Hb_025246_010 Hb_000175_040--Hb_000699_110 Hb_000788_120 Hb_000788_120 Hb_000175_040--Hb_000788_120 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_004502_080 Hb_004502_080 Hb_000175_040--Hb_004502_080 Hb_011161_070 Hb_011161_070 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_142522_010 Hb_142522_010 Hb_008078_030--Hb_142522_010 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_145761_010 Hb_145761_010 Hb_008078_030--Hb_145761_010 Hb_000221_100 Hb_000221_100 Hb_008078_030--Hb_000221_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29585 1.19224 0.997444 0.963359 2.95742 2.08591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92941 7.25076 0 0.116719 2.06613

CAGE analysis