Hb_007904_160

Information

Type -
Description -
Location Contig7904: 85824-90371
Sequence    

Annotation

kegg
ID tcc:TCM_010670
description TCP-1/cpn60 chaperonin family protein isoform 1
nr
ID XP_012085554.1
description PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
swissprot
ID O04450
description T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=CCT5 PE=1 SV=1
trembl
ID A0A067JS12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17874 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58325: 88356-90495
cDNA
(Sanger)
(ID:Location)		 039_K08.ab1: 88577-90495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_160 0.0 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
2 Hb_000983_150 0.0534000355 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
3 Hb_000367_010 0.0650550627 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
4 Hb_000109_210 0.0827941065 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_000212_310 0.0842677577 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
6 Hb_143629_110 0.0848729773 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
7 Hb_000083_250 0.0879022144 - - ring finger protein, putative [Ricinus communis]
8 Hb_006660_010 0.0885371012 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
9 Hb_123903_010 0.0888182496 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
10 Hb_001617_060 0.0893686957 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
11 Hb_002131_020 0.089574661 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
12 Hb_006634_070 0.090019667 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
13 Hb_002078_020 0.0908090385 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_002946_160 0.0908877081 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
15 Hb_009548_020 0.091485039 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_000008_290 0.0919857866 - - PREDICTED: protein SAND [Jatropha curcas]
17 Hb_032202_200 0.0923704644 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_030116_020 0.0948528792 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
19 Hb_000700_140 0.095105364 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
20 Hb_004102_140 0.0967130415 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007904_160 Hb_007904_160 Hb_000983_150 Hb_000983_150 Hb_007904_160--Hb_000983_150 Hb_000367_010 Hb_000367_010 Hb_007904_160--Hb_000367_010 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_000212_310 Hb_000212_310 Hb_007904_160--Hb_000212_310 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_000367_010--Hb_023480_010 Hb_000700_140 Hb_000700_140 Hb_000367_010--Hb_000700_140 Hb_001617_060 Hb_001617_060 Hb_000367_010--Hb_001617_060 Hb_002684_040 Hb_002684_040 Hb_000109_210--Hb_002684_040 Hb_000470_070 Hb_000470_070 Hb_000109_210--Hb_000470_070 Hb_000333_060 Hb_000333_060 Hb_000109_210--Hb_000333_060 Hb_019654_040 Hb_019654_040 Hb_000109_210--Hb_019654_040 Hb_000109_210--Hb_000983_150 Hb_011174_090 Hb_011174_090 Hb_000109_210--Hb_011174_090 Hb_006660_010 Hb_006660_010 Hb_000212_310--Hb_006660_010 Hb_002169_050 Hb_002169_050 Hb_000212_310--Hb_002169_050 Hb_002909_140 Hb_002909_140 Hb_000212_310--Hb_002909_140 Hb_000212_380 Hb_000212_380 Hb_000212_310--Hb_000212_380 Hb_004676_010 Hb_004676_010 Hb_000212_310--Hb_004676_010 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180 Hb_000808_280 Hb_000808_280 Hb_000083_250--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_000083_250--Hb_001454_130 Hb_000630_050 Hb_000630_050 Hb_000083_250--Hb_000630_050 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_001018_130 Hb_001018_130 Hb_000083_250--Hb_001018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.4271 37.4778 40.0972 65.1071 65.6647 89.1334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3189 35.3913 72.5309 73.6991 44.2279

CAGE analysis