Hb_007904_170

Information

Type -
Description -
Location Contig7904: 91244-91534
Sequence    

Annotation

kegg
ID pop:POPTR_0008s18270g
description hypothetical protein
nr
ID XP_012085884.1
description PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_170 0.0 - - PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
2 Hb_000572_040 0.1926304149 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
3 Hb_002150_050 0.2174304371 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000046_620 0.2191219015 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
5 Hb_004162_180 0.226249158 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000045_210 0.2437037171 - - -
7 Hb_141194_010 0.2503696203 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
8 Hb_027337_120 0.2535934048 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
9 Hb_005054_270 0.2595803524 - - -
10 Hb_012053_010 0.2601074883 - - srpk, putative [Ricinus communis]
11 Hb_001123_100 0.2603132241 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
12 Hb_004448_060 0.2610440882 - - conserved hypothetical protein [Ricinus communis]
13 Hb_044653_060 0.2670378062 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
14 Hb_004108_110 0.2677695182 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000589_160 0.2700858135 - - PREDICTED: expansin-A4 [Jatropha curcas]
16 Hb_001766_030 0.2789538516 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
17 Hb_002105_030 0.2790470295 - - -
18 Hb_061383_010 0.2794523839 - - beta-1,3-glucanase [Hevea brasiliensis]
19 Hb_001214_080 0.286592479 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
20 Hb_006342_020 0.2870043332 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007904_170 Hb_007904_170 Hb_000572_040 Hb_000572_040 Hb_007904_170--Hb_000572_040 Hb_002150_050 Hb_002150_050 Hb_007904_170--Hb_002150_050 Hb_000046_620 Hb_000046_620 Hb_007904_170--Hb_000046_620 Hb_004162_180 Hb_004162_180 Hb_007904_170--Hb_004162_180 Hb_000045_210 Hb_000045_210 Hb_007904_170--Hb_000045_210 Hb_141194_010 Hb_141194_010 Hb_007904_170--Hb_141194_010 Hb_001123_100 Hb_001123_100 Hb_000572_040--Hb_001123_100 Hb_011628_020 Hb_011628_020 Hb_000572_040--Hb_011628_020 Hb_001214_080 Hb_001214_080 Hb_000572_040--Hb_001214_080 Hb_002784_100 Hb_002784_100 Hb_000572_040--Hb_002784_100 Hb_000572_040--Hb_000046_620 Hb_061383_010 Hb_061383_010 Hb_002150_050--Hb_061383_010 Hb_027337_120 Hb_027337_120 Hb_002150_050--Hb_027337_120 Hb_001247_330 Hb_001247_330 Hb_002150_050--Hb_001247_330 Hb_002150_050--Hb_001214_080 Hb_000563_260 Hb_000563_260 Hb_002150_050--Hb_000563_260 Hb_001146_060 Hb_001146_060 Hb_002150_050--Hb_001146_060 Hb_001863_420 Hb_001863_420 Hb_000046_620--Hb_001863_420 Hb_138455_010 Hb_138455_010 Hb_000046_620--Hb_138455_010 Hb_012053_010 Hb_012053_010 Hb_000046_620--Hb_012053_010 Hb_000046_620--Hb_027337_120 Hb_058143_010 Hb_058143_010 Hb_000046_620--Hb_058143_010 Hb_001511_140 Hb_001511_140 Hb_000046_620--Hb_001511_140 Hb_025645_030 Hb_025645_030 Hb_004162_180--Hb_025645_030 Hb_001766_030 Hb_001766_030 Hb_004162_180--Hb_001766_030 Hb_000110_170 Hb_000110_170 Hb_004162_180--Hb_000110_170 Hb_003777_040 Hb_003777_040 Hb_004162_180--Hb_003777_040 Hb_001225_010 Hb_001225_010 Hb_004162_180--Hb_001225_010 Hb_004162_180--Hb_012053_010 Hb_000045_210--Hb_141194_010 Hb_044653_060 Hb_044653_060 Hb_000045_210--Hb_044653_060 Hb_027892_040 Hb_027892_040 Hb_000045_210--Hb_027892_040 Hb_001266_030 Hb_001266_030 Hb_000045_210--Hb_001266_030 Hb_000045_210--Hb_012053_010 Hb_000431_160 Hb_000431_160 Hb_000045_210--Hb_000431_160 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.304432 0.536229 0.175373 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21419 13.0813 4.0168 0.742513 2.90242

CAGE analysis