Hb_007904_180

Information

Type -
Description -
Location Contig7904: 96647-98608
Sequence    

Annotation

kegg
ID rcu:RCOM_1083050
description RNA binding protein, putative
nr
ID XP_012085540.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
swissprot
ID Q9SVM8
description Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1
trembl
ID A0A067K3A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17863 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cleavage and polyadenylation specificity factor subunit 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58329: 96078-99522 , PASA_asmbl_58330: 99134-99401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_180 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
2 Hb_004037_030 0.0744845446 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
3 Hb_000475_020 0.0787850591 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
4 Hb_000002_440 0.0791120606 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
5 Hb_001811_120 0.0804117239 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
6 Hb_000813_100 0.0807461998 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_006816_300 0.0808624987 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
8 Hb_000096_180 0.0815462829 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_000250_070 0.0827879211 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
10 Hb_007849_020 0.0829847288 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_000640_200 0.0833046018 - - hypothetical protein RCOM_1346600 [Ricinus communis]
12 Hb_000227_380 0.0869274902 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
13 Hb_002471_210 0.089997276 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
14 Hb_002105_080 0.0901342717 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_006501_020 0.0905713547 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
16 Hb_000365_060 0.0910885268 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_000023_060 0.0920043448 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
18 Hb_002291_070 0.0949469226 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
19 Hb_001301_210 0.0950604566 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
20 Hb_000239_070 0.095957326 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_180 Hb_007904_180 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_001811_120 Hb_001811_120 Hb_007904_180--Hb_001811_120 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_006816_300 Hb_006816_300 Hb_007904_180--Hb_006816_300 Hb_004037_030--Hb_000002_440 Hb_000699_250 Hb_000699_250 Hb_004037_030--Hb_000699_250 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_000239_070 Hb_000239_070 Hb_004037_030--Hb_000239_070 Hb_042487_010 Hb_042487_010 Hb_004037_030--Hb_042487_010 Hb_000475_020--Hb_001811_120 Hb_002471_210 Hb_002471_210 Hb_000475_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000002_440--Hb_000813_100 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_001811_120--Hb_000250_070 Hb_001811_120--Hb_002291_070 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_000813_100--Hb_147737_010 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
146.484 121.426 17.7078 32.2452 149.798 200.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7712 26.1574 35.962 57.2971 53.9841

CAGE analysis