Hb_007904_210

Information

Type -
Description -
Location Contig7904: 117319-125198
Sequence    

Annotation

kegg
ID rcu:RCOM_1083170
description Oxysterol-binding protein, putative
nr
ID XP_012085545.1
description PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
swissprot
ID Q9SAF0
description Oxysterol-binding protein-related protein 1D OS=Arabidopsis thaliana GN=ORP1D PE=2 SV=1
trembl
ID A0A067JS75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58335: 117255-125260 , PASA_asmbl_58337: 122766-123155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_210 0.0 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
2 Hb_000300_600 0.0988283279 - - tubulin alpha chain, putative [Ricinus communis]
3 Hb_003206_090 0.1019979718 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
4 Hb_000072_090 0.115587703 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
5 Hb_000371_090 0.1197693313 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
6 Hb_000022_200 0.1236633576 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
7 Hb_000556_150 0.1244985579 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
8 Hb_000352_120 0.1283773089 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
9 Hb_002351_030 0.1297917223 - - catalytic, putative [Ricinus communis]
10 Hb_001789_030 0.1301544045 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
11 Hb_001269_330 0.1303564922 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
12 Hb_002631_070 0.1310194203 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
13 Hb_000634_020 0.1334802241 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
14 Hb_003777_200 0.1369794528 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
15 Hb_002876_320 0.1377015222 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
16 Hb_001500_110 0.1388220916 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_159809_030 0.1397166894 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
18 Hb_003994_280 0.1405629345 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
19 Hb_000684_080 0.1406932197 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
20 Hb_001143_190 0.1412361248 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_210 Hb_007904_210 Hb_000300_600 Hb_000300_600 Hb_007904_210--Hb_000300_600 Hb_003206_090 Hb_003206_090 Hb_007904_210--Hb_003206_090 Hb_000072_090 Hb_000072_090 Hb_007904_210--Hb_000072_090 Hb_000371_090 Hb_000371_090 Hb_007904_210--Hb_000371_090 Hb_000022_200 Hb_000022_200 Hb_007904_210--Hb_000022_200 Hb_000556_150 Hb_000556_150 Hb_007904_210--Hb_000556_150 Hb_003777_200 Hb_003777_200 Hb_000300_600--Hb_003777_200 Hb_000300_600--Hb_000371_090 Hb_001507_120 Hb_001507_120 Hb_000300_600--Hb_001507_120 Hb_001269_330 Hb_001269_330 Hb_000300_600--Hb_001269_330 Hb_000300_600--Hb_003206_090 Hb_000352_120 Hb_000352_120 Hb_003206_090--Hb_000352_120 Hb_003206_090--Hb_003777_200 Hb_002473_050 Hb_002473_050 Hb_003206_090--Hb_002473_050 Hb_000317_040 Hb_000317_040 Hb_003206_090--Hb_000317_040 Hb_006816_090 Hb_006816_090 Hb_000072_090--Hb_006816_090 Hb_000071_150 Hb_000071_150 Hb_000072_090--Hb_000071_150 Hb_000136_110 Hb_000136_110 Hb_000072_090--Hb_000136_110 Hb_171334_010 Hb_171334_010 Hb_000072_090--Hb_171334_010 Hb_001472_060 Hb_001472_060 Hb_000072_090--Hb_001472_060 Hb_001014_100 Hb_001014_100 Hb_000072_090--Hb_001014_100 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_011214_160 Hb_011214_160 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_000261_330 Hb_000261_330 Hb_000022_200--Hb_000261_330 Hb_045770_010 Hb_045770_010 Hb_000022_200--Hb_045770_010 Hb_002900_080 Hb_002900_080 Hb_000022_200--Hb_002900_080 Hb_002485_030 Hb_002485_030 Hb_000022_200--Hb_002485_030 Hb_001085_260 Hb_001085_260 Hb_000022_200--Hb_001085_260 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4248 4.4017 14.2435 23.0396 14.7424 10.8884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94856 2.94924 15.2847 9.231 10.9586

CAGE analysis