Hb_007904_220

Information

Type -
Description -
Location Contig7904: 125200-130800
Sequence    

Annotation

kegg
ID rcu:RCOM_1083180
description dentin sialophosphoprotein precursor, putative
nr
ID XP_012085543.1
description PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9NVU7
description Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3
trembl
ID A0A067JVA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17866 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein sda1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58338: 125531-127086 , PASA_asmbl_58340: 130382-130587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_220 0.0 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
2 Hb_005205_020 0.0658758603 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
3 Hb_025012_010 0.0716350162 - - PREDICTED: importin-4 [Vitis vinifera]
4 Hb_001221_040 0.081579681 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
5 Hb_002067_150 0.0824732253 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
6 Hb_000436_040 0.0839196757 - - PREDICTED: transportin-1 [Jatropha curcas]
7 Hb_002028_170 0.0881383224 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
8 Hb_000429_120 0.0926061166 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
9 Hb_000743_050 0.0934089772 - - unnamed protein product [Vitis vinifera]
10 Hb_001943_010 0.0941825713 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_000977_180 0.0946597272 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
12 Hb_000347_130 0.0952365601 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
13 Hb_021409_170 0.0953085981 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
14 Hb_042487_010 0.09563562 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
15 Hb_011716_020 0.0967949733 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
16 Hb_000046_440 0.0970477815 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
17 Hb_001322_210 0.0970881377 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
18 Hb_002027_270 0.0973457036 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_002217_150 0.0977346749 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
20 Hb_007407_040 0.098219725 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007904_220 Hb_007904_220 Hb_005205_020 Hb_005205_020 Hb_007904_220--Hb_005205_020 Hb_025012_010 Hb_025012_010 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_002067_150 Hb_002067_150 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_001943_010 Hb_001943_010 Hb_005205_020--Hb_001943_010 Hb_005205_020--Hb_002067_150 Hb_001322_210 Hb_001322_210 Hb_005205_020--Hb_001322_210 Hb_001771_130 Hb_001771_130 Hb_005205_020--Hb_001771_130 Hb_005205_020--Hb_025012_010 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_005977_090 Hb_005977_090 Hb_002067_150--Hb_005977_090 Hb_000568_040 Hb_000568_040 Hb_002067_150--Hb_000568_040 Hb_000600_070 Hb_000600_070 Hb_002067_150--Hb_000600_070 Hb_002067_150--Hb_025012_010 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_011716_020 Hb_011716_020 Hb_002028_170--Hb_011716_020 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_000158_100 Hb_000158_100 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0677 9.23334 3.59896 6.9921 26.2991 35.3859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4539 8.29231 12.149 18.8897 9.9299

CAGE analysis