Hb_007904_240

Information

Type -
Description -
Location Contig7904: 140062-143057
Sequence    

Annotation

kegg
ID tcc:TCM_010656
description Terminal EAR1-like 1, putative isoform 1
nr
ID XP_012085547.1
description PREDICTED: protein terminal ear1 [Jatropha curcas]
swissprot
ID O65001
description Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1
trembl
ID A0A067K3B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17868 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein terminal ear1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_240 0.0 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
2 Hb_021576_020 0.2190771633 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
3 Hb_000878_140 0.2237615741 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
4 Hb_002998_070 0.2332893293 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
5 Hb_006726_010 0.2401049959 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
6 Hb_007943_060 0.2418619344 - - Rop5 [Hevea brasiliensis]
7 Hb_000069_770 0.2448663452 - - translation initiation factor [Rheum australe]
8 Hb_001545_070 0.2449108444 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001221_330 0.2492094875 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
10 Hb_000487_120 0.2562498396 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005306_010 0.2567761542 - - -
12 Hb_000008_380 0.2669404542 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001486_010 0.2687634335 - - adenylsulfate kinase, putative [Ricinus communis]
14 Hb_022250_020 0.2746963349 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
15 Hb_075247_010 0.2776235446 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
16 Hb_001554_010 0.2807504854 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
17 Hb_005181_160 0.2865246294 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
18 Hb_000712_050 0.2870624651 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
19 Hb_071130_050 0.2879156982 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
20 Hb_009707_030 0.2889644527 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_240 Hb_007904_240 Hb_021576_020 Hb_021576_020 Hb_007904_240--Hb_021576_020 Hb_000878_140 Hb_000878_140 Hb_007904_240--Hb_000878_140 Hb_002998_070 Hb_002998_070 Hb_007904_240--Hb_002998_070 Hb_006726_010 Hb_006726_010 Hb_007904_240--Hb_006726_010 Hb_007943_060 Hb_007943_060 Hb_007904_240--Hb_007943_060 Hb_000069_770 Hb_000069_770 Hb_007904_240--Hb_000069_770 Hb_001554_010 Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_021576_020--Hb_002998_070 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_000008_380 Hb_000008_380 Hb_000878_140--Hb_000008_380 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_000878_140--Hb_007943_060 Hb_014720_010 Hb_014720_010 Hb_000878_140--Hb_014720_010 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_006726_010--Hb_000069_770 Hb_006726_010--Hb_021576_020 Hb_000061_200 Hb_000061_200 Hb_006726_010--Hb_000061_200 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000388_030 Hb_000388_030 Hb_006726_010--Hb_000388_030 Hb_007943_060--Hb_001545_070 Hb_001287_010 Hb_001287_010 Hb_007943_060--Hb_001287_010 Hb_009707_030 Hb_009707_030 Hb_007943_060--Hb_009707_030 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_007943_060--Hb_000487_120 Hb_000069_770--Hb_000487_120 Hb_000069_770--Hb_002998_070 Hb_000069_770--Hb_005306_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0115941 0.0231484 0.155235 0.116402 0.036241 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212484 0.0835959 0.1905 0.0398897 0

CAGE analysis