Hb_007904_270

Information

Type -
Description -
Location Contig7904: 170192-173585
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_270 0.0 - - -
2 Hb_000008_260 0.1893381918 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009467_030 0.1897587174 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
4 Hb_102438_010 0.2086186569 - - -
5 Hb_159085_010 0.2181066093 - - -
6 Hb_004917_050 0.2272458332 - - -
7 Hb_000736_010 0.2550855637 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
8 Hb_001386_080 0.2571000816 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
9 Hb_005736_040 0.2579653319 - - -
10 Hb_005714_050 0.275034787 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
11 Hb_039305_010 0.2757767947 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
12 Hb_000979_050 0.2768668213 - - -
13 Hb_003773_030 0.2781300774 - - -
14 Hb_008092_140 0.2829792366 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
15 Hb_000067_020 0.2833582181 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
16 Hb_000453_210 0.2844908735 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
17 Hb_000987_090 0.2849746199 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_032660_020 0.2853782487 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
19 Hb_000501_020 0.2892540733 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
20 Hb_001787_040 0.2911411038 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007904_270 Hb_007904_270 Hb_000008_260 Hb_000008_260 Hb_007904_270--Hb_000008_260 Hb_009467_030 Hb_009467_030 Hb_007904_270--Hb_009467_030 Hb_102438_010 Hb_102438_010 Hb_007904_270--Hb_102438_010 Hb_159085_010 Hb_159085_010 Hb_007904_270--Hb_159085_010 Hb_004917_050 Hb_004917_050 Hb_007904_270--Hb_004917_050 Hb_000736_010 Hb_000736_010 Hb_007904_270--Hb_000736_010 Hb_000008_260--Hb_009467_030 Hb_000008_260--Hb_102438_010 Hb_000008_260--Hb_004917_050 Hb_000979_050 Hb_000979_050 Hb_000008_260--Hb_000979_050 Hb_000008_260--Hb_159085_010 Hb_009467_030--Hb_102438_010 Hb_009467_030--Hb_004917_050 Hb_001386_080 Hb_001386_080 Hb_009467_030--Hb_001386_080 Hb_009467_030--Hb_000979_050 Hb_102438_010--Hb_004917_050 Hb_001787_040 Hb_001787_040 Hb_102438_010--Hb_001787_040 Hb_102438_010--Hb_159085_010 Hb_039305_010 Hb_039305_010 Hb_159085_010--Hb_039305_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_000067_020 Hb_000067_020 Hb_159085_010--Hb_000067_020 Hb_004917_050--Hb_000979_050 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140 Hb_000736_010--Hb_039305_010 Hb_148262_020 Hb_148262_020 Hb_000736_010--Hb_148262_020 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0762239 0.125132 0 0.0296722 0.329914 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71184 1.03994 0 0 0

CAGE analysis