Hb_007904_280

Information

Type -
Description -
Location Contig7904: 182315-190612
Sequence    

Annotation

kegg
ID cic:CICLE_v10030798mg
description hypothetical protein
nr
ID XP_012085882.1
description PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
swissprot
ID Q9FXE2
description Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana GN=SEOC PE=4 SV=2
trembl
ID V4TDR0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030798mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58345: 182293-185332 , PASA_asmbl_58347: 189130-189691
cDNA
(Sanger)
(ID:Location)		 004_E10.ab1: 184378-185320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_280 0.0 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
2 Hb_012132_050 0.0624205489 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
3 Hb_009783_010 0.0639041243 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
4 Hb_004223_060 0.0649480762 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
5 Hb_000878_050 0.0774848288 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
6 Hb_001136_160 0.0815556134 - - catalytic, putative [Ricinus communis]
7 Hb_000012_350 0.0828052732 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
8 Hb_001898_040 0.085137426 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_000077_280 0.0853871854 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_005784_010 0.0920278857 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
11 Hb_005542_120 0.0933404708 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
12 Hb_000964_040 0.0943132156 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
13 Hb_009785_030 0.0943192179 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
14 Hb_000345_550 0.0955835147 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
15 Hb_020738_010 0.0956764533 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
16 Hb_000003_280 0.0963869494 - - conserved hypothetical protein [Ricinus communis]
17 Hb_050898_030 0.0998036692 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000003_370 0.0999325981 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
19 Hb_001117_050 0.1007725549 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
20 Hb_001794_040 0.1023581524 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_280 Hb_007904_280 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_009783_010 Hb_009783_010 Hb_007904_280--Hb_009783_010 Hb_004223_060 Hb_004223_060 Hb_007904_280--Hb_004223_060 Hb_000878_050 Hb_000878_050 Hb_007904_280--Hb_000878_050 Hb_001136_160 Hb_001136_160 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_012132_050--Hb_001136_160 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_009783_010--Hb_001898_040 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_001136_040 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_001794_040 Hb_001794_040 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0866153 2.77659 10.739 22.1774 0.281689 0.277637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00918503 0.00722851 0 0.769673 8.58303

CAGE analysis