Hb_007908_020

Information

Type -
Description -
Location Contig7908: 51576-52496
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02910g
description POPTRDRAFT_734690; zinc finger family protein
nr
ID XP_002323210.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9IHK2
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58350: 31684-52801 , PASA_asmbl_58351: 31738-52773
cDNA
(Sanger)
(ID:Location)		 014_N04.ab1: 31731-52128 , 019_D23.ab1: 31684-52136 , 037_N02.ab1: 31732-52258 , 050_D05.ab1: 31684-52035

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007908_020 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_000025_200 0.0661796126 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
3 Hb_002027_130 0.0708659856 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
4 Hb_002477_160 0.0744411268 - - hypothetical protein L484_013453 [Morus notabilis]
5 Hb_000120_950 0.0745668935 - - PREDICTED: protein GRIP [Jatropha curcas]
6 Hb_000001_020 0.0751996235 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
7 Hb_001584_330 0.0782157031 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
8 Hb_003609_040 0.0785902151 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
9 Hb_003376_040 0.0785991088 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
10 Hb_004812_010 0.0792615399 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
11 Hb_000436_070 0.08159526 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
12 Hb_005306_110 0.0820469776 - - casein kinase, putative [Ricinus communis]
13 Hb_000030_010 0.083047942 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_002368_050 0.0846012991 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001671_080 0.0856878728 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_001030_120 0.0857113534 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_000029_030 0.0879829414 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
18 Hb_000754_060 0.0887122301 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_005062_070 0.0887995824 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
20 Hb_001623_420 0.0909686987 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007908_020 Hb_007908_020 Hb_000025_200 Hb_000025_200 Hb_007908_020--Hb_000025_200 Hb_002027_130 Hb_002027_130 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_000001_020 Hb_000001_020 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_000025_200--Hb_000001_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_000436_070 Hb_000436_070 Hb_002027_130--Hb_000436_070 Hb_002027_130--Hb_000001_020 Hb_003609_040 Hb_003609_040 Hb_002027_130--Hb_003609_040 Hb_002027_130--Hb_000120_950 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000001_020--Hb_003609_040 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
309.543 104.163 73.0906 89.1763 271.267 269.201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
315.767 183.838 310.146 64.3787 49.9633

CAGE analysis