Hb_007919_010

Information

Type -
Description -
Location Contig7919: 6155-6883
Sequence    

Annotation

kegg
ID rcu:RCOM_1602500
description hypothetical protein
nr
ID XP_002510752.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9R8V9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58361: 6106-6987
cDNA
(Sanger)
(ID:Location)		 030_J24.ab1: 6106-6890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_180088_010 0.0601499067 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000098_230 0.0735866645 - - Potassium channel AKT2/3, putative [Ricinus communis]
4 Hb_006351_050 0.0764026652 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
5 Hb_000422_060 0.0778036089 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
6 Hb_001500_020 0.0803431694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001579_160 0.082400697 - - PREDICTED: kininogen-1-like [Jatropha curcas]
8 Hb_001541_170 0.0827438758 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_000614_120 0.0884541604 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
10 Hb_009421_060 0.0893543463 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_008021_050 0.0905235187 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000646_040 0.0939867832 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
13 Hb_000172_450 0.0991206224 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
14 Hb_021596_050 0.0999922514 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003582_030 0.1029781354 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
16 Hb_000120_560 0.1051417863 - - protein with unknown function [Ricinus communis]
17 Hb_120040_010 0.1052933325 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_011344_050 0.1102391497 - - PREDICTED: 21 kDa protein [Jatropha curcas]
19 Hb_000175_370 0.1105583197 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
20 Hb_002186_110 0.1106471948 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_007919_010 Hb_007919_010 Hb_180088_010 Hb_180088_010 Hb_007919_010--Hb_180088_010 Hb_000098_230 Hb_000098_230 Hb_007919_010--Hb_000098_230 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_000422_060 Hb_000422_060 Hb_007919_010--Hb_000422_060 Hb_001500_020 Hb_001500_020 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160 Hb_180088_010--Hb_006351_050 Hb_180088_010--Hb_001500_020 Hb_112950_010 Hb_112950_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_003598_050 Hb_003598_050 Hb_180088_010--Hb_003598_050 Hb_001541_170 Hb_001541_170 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_006351_050--Hb_001500_020 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_002186_170 Hb_002186_170 Hb_000422_060--Hb_002186_170 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_001579_160--Hb_009421_060 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_001579_160--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.11243 1.64708 13.3498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366407 2.03185

CAGE analysis