Hb_007919_020

Information

Type -
Description -
Location Contig7919: 11493-16464
Sequence    

Annotation

kegg
ID rcu:RCOM_1602510
description electron transporter, putative
nr
ID XP_002510753.1
description electron transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8W0
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1602510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58362: 11856-16502 , PASA_asmbl_58363: 11793-16383 , PASA_asmbl_58364: 14380-14693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_020 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_001946_220 0.1432067609 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
3 Hb_000270_180 0.1635112434 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
4 Hb_000368_030 0.1733851347 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
5 Hb_001205_080 0.1779696321 - - Protein FAM96B, putative [Ricinus communis]
6 Hb_000742_010 0.1780516412 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000648_050 0.1800555273 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
8 Hb_001623_160 0.182369776 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
9 Hb_003038_140 0.1833143161 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
10 Hb_009571_010 0.1838051569 - - early-responsive to dehydration family protein [Populus trichocarpa]
11 Hb_002235_390 0.1853747525 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
12 Hb_000144_120 0.1860189331 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_003531_070 0.1877515535 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
14 Hb_001140_360 0.1884490266 - - -
15 Hb_001476_060 0.1887688584 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
16 Hb_002615_150 0.1888341948 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
17 Hb_000975_350 0.1889418424 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_001482_050 0.1890127926 - - COR413-PM2, putative [Ricinus communis]
19 Hb_002027_030 0.1899900642 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002811_280 0.1905269461 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007919_020 Hb_007919_020 Hb_001946_220 Hb_001946_220 Hb_007919_020--Hb_001946_220 Hb_000270_180 Hb_000270_180 Hb_007919_020--Hb_000270_180 Hb_000368_030 Hb_000368_030 Hb_007919_020--Hb_000368_030 Hb_001205_080 Hb_001205_080 Hb_007919_020--Hb_001205_080 Hb_000742_010 Hb_000742_010 Hb_007919_020--Hb_000742_010 Hb_000648_050 Hb_000648_050 Hb_007919_020--Hb_000648_050 Hb_000120_720 Hb_000120_720 Hb_001946_220--Hb_000120_720 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_000320_300 Hb_000320_300 Hb_001946_220--Hb_000320_300 Hb_001946_220--Hb_001205_080 Hb_000270_180--Hb_000648_050 Hb_002249_070 Hb_002249_070 Hb_000270_180--Hb_002249_070 Hb_000270_180--Hb_000368_030 Hb_000220_030 Hb_000220_030 Hb_000270_180--Hb_000220_030 Hb_000684_520 Hb_000684_520 Hb_000270_180--Hb_000684_520 Hb_029385_010 Hb_029385_010 Hb_000270_180--Hb_029385_010 Hb_005181_160 Hb_005181_160 Hb_000368_030--Hb_005181_160 Hb_001221_330 Hb_001221_330 Hb_000368_030--Hb_001221_330 Hb_000368_030--Hb_001946_220 Hb_000368_030--Hb_002249_070 Hb_002686_200 Hb_002686_200 Hb_001205_080--Hb_002686_200 Hb_006824_010 Hb_006824_010 Hb_001205_080--Hb_006824_010 Hb_002693_030 Hb_002693_030 Hb_001205_080--Hb_002693_030 Hb_001205_080--Hb_000742_010 Hb_065968_010 Hb_065968_010 Hb_001205_080--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_001205_080--Hb_000703_330 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_000913_030 Hb_000913_030 Hb_000742_010--Hb_000913_030 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_007590_090 Hb_007590_090 Hb_000648_050--Hb_007590_090 Hb_002486_080 Hb_002486_080 Hb_000648_050--Hb_002486_080 Hb_000017_260 Hb_000017_260 Hb_000648_050--Hb_000017_260 Hb_001817_100 Hb_001817_100 Hb_000648_050--Hb_001817_100 Hb_000009_520 Hb_000009_520 Hb_000648_050--Hb_000009_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.12241 9.3244 16.4763 16.8243 1.39379 1.56136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7254 5.79915 12.7489 24.4484 3.92855

CAGE analysis