Hb_007919_050

Information

Type -
Description -
Location Contig7919: 41787-45766
Sequence    

Annotation

kegg
ID pop:POPTR_0005s28090g
description POPTRDRAFT_715748; hypothetical protein
nr
ID XP_012073530.1
description PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08005 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58371: 42075-43085 , PASA_asmbl_58372: 44028-45701 , PASA_asmbl_58373: 44028-45322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_050 0.0 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
2 Hb_001439_120 0.0695308644 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006569_020 0.0745166842 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
4 Hb_159558_030 0.0764165249 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
5 Hb_000500_130 0.0775680468 - - small GTPase [Hevea brasiliensis]
6 Hb_158092_070 0.0789779351 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_022250_040 0.0816962129 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_000029_030 0.0828311052 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
9 Hb_002686_270 0.0830881669 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003052_100 0.0833227362 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_009711_030 0.084336938 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
12 Hb_071736_020 0.0850240683 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_133271_020 0.0873669326 - - prohibitin, putative [Ricinus communis]
14 Hb_004662_030 0.0894247676 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
15 Hb_002368_050 0.0894873951 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003125_040 0.0899351311 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
17 Hb_000975_290 0.0902505951 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_002078_450 0.0906232229 - - nuclear transport factor, putative [Ricinus communis]
19 Hb_001008_060 0.0912145866 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
20 Hb_182026_020 0.0923157624 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007919_050 Hb_007919_050 Hb_001439_120 Hb_001439_120 Hb_007919_050--Hb_001439_120 Hb_006569_020 Hb_006569_020 Hb_007919_050--Hb_006569_020 Hb_159558_030 Hb_159558_030 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_022250_040 Hb_022250_040 Hb_007919_050--Hb_022250_040 Hb_000556_080 Hb_000556_080 Hb_001439_120--Hb_000556_080 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_010638_020 Hb_010638_020 Hb_001439_120--Hb_010638_020 Hb_182026_020 Hb_182026_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_000500_130--Hb_022250_040 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8362 2.03783 1.63404 5.44703 11.3817 12.4643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4464 10.7267 10.8711 3.43524 1.30226

CAGE analysis