Hb_007922_020

Information

Type -
Description -
Location Contig7922: 18882-20855
Sequence    

Annotation

kegg
ID rcu:RCOM_0331930
description hypothetical protein
nr
ID XP_012087752.1
description PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
swissprot
ID Q7ZXQ8
description DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1
trembl
ID A0A067JL33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58410: 18940-19624 , PASA_asmbl_58412: 20391-21181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007922_020 0.0 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
2 Hb_000261_060 0.0601608414 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
3 Hb_036790_080 0.0890594572 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
4 Hb_001435_030 0.0956242129 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
5 Hb_003994_110 0.0979257944 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
6 Hb_007317_140 0.0988677107 - - expressed protein, putative [Ricinus communis]
7 Hb_032920_050 0.100358283 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
8 Hb_001008_120 0.1004463009 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
9 Hb_005253_030 0.1030279711 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_020665_010 0.1048242279 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
11 Hb_010710_070 0.1049181751 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
12 Hb_028912_050 0.106697876 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
13 Hb_003020_030 0.1069437143 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
14 Hb_001369_750 0.1077450307 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
15 Hb_001005_050 0.10825476 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
16 Hb_003467_030 0.1084203397 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
17 Hb_000204_120 0.1086332389 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
18 Hb_000815_170 0.1092672686 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
19 Hb_000087_140 0.1095272238 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
20 Hb_002276_020 0.1129064232 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007922_020 Hb_007922_020 Hb_000261_060 Hb_000261_060 Hb_007922_020--Hb_000261_060 Hb_036790_080 Hb_036790_080 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007317_140 Hb_007317_140 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_000261_060--Hb_036790_080 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_005253_030 Hb_005253_030 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_000261_060--Hb_007317_140 Hb_036790_080--Hb_005253_030 Hb_036790_080--Hb_032920_050 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_036790_080--Hb_001435_030 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_002055_040 Hb_002055_040 Hb_001435_030--Hb_002055_040 Hb_001435_030--Hb_005253_030 Hb_003467_030 Hb_003467_030 Hb_001435_030--Hb_003467_030 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_028912_050 Hb_028912_050 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_001301_100 Hb_001301_100 Hb_007317_140--Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_007317_140--Hb_001442_040 Hb_007317_140--Hb_003020_030 Hb_032920_050--Hb_000130_320 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80149 5.56794 3.2428 6.44487 8.20158 11.6915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3887 6.86454 8.50437 7.79263 20.1729

CAGE analysis