Hb_007922_030

Information

Type -
Description -
Location Contig7922: 25308-25913
Sequence    

Annotation

kegg
ID rcu:RCOM_0331920
description hypothetical protein
nr
ID XP_011004822.1
description PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9T855
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0331920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007922_030 0.0 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
2 Hb_007221_020 0.048263898 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_008021_060 0.0488928226 - - Squalene monooxygenase, putative [Ricinus communis]
4 Hb_001652_100 0.0548213017 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
5 Hb_001021_120 0.0606502509 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
6 Hb_000058_180 0.0624962905 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
7 Hb_031321_020 0.0646283452 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
8 Hb_132840_190 0.065952967 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_009486_050 0.0727230043 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
10 Hb_031022_030 0.0778061277 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
11 Hb_019516_010 0.0791913267 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
12 Hb_000321_110 0.0807743174 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
13 Hb_000009_270 0.0841097259 - - Calmodulin, putative [Ricinus communis]
14 Hb_007120_120 0.0866891632 - - protein binding protein, putative [Ricinus communis]
15 Hb_009663_020 0.0887122329 - - -
16 Hb_000847_090 0.088914544 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
17 Hb_002609_120 0.0905723337 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
18 Hb_000538_090 0.0908518042 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
19 Hb_024071_030 0.0909905134 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
20 Hb_000331_170 0.091946433 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_007922_030 Hb_007922_030 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_031321_020 Hb_031321_020 Hb_007922_030--Hb_031321_020 Hb_007221_020--Hb_031321_020 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_004453_160 Hb_004453_160 Hb_007221_020--Hb_004453_160 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_008021_060--Hb_001652_100 Hb_008021_060--Hb_000058_180 Hb_008147_020 Hb_008147_020 Hb_008021_060--Hb_008147_020 Hb_008021_060--Hb_132840_190 Hb_007120_120 Hb_007120_120 Hb_008021_060--Hb_007120_120 Hb_001652_100--Hb_007120_120 Hb_001652_100--Hb_000058_180 Hb_009663_020 Hb_009663_020 Hb_001652_100--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_001652_100--Hb_016734_100 Hb_000009_270 Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_001021_120--Hb_098315_060 Hb_000538_090 Hb_000538_090 Hb_000058_180--Hb_000538_090 Hb_000058_180--Hb_008147_020 Hb_001642_020 Hb_001642_020 Hb_000058_180--Hb_001642_020 Hb_031321_020--Hb_031022_030 Hb_031321_020--Hb_000134_130 Hb_000331_170 Hb_000331_170 Hb_031321_020--Hb_000331_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0726778 4.12428 3.08158 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0640982 2.27352

CAGE analysis