Hb_007924_020

Information

Type -
Description -
Location Contig7924: 23555-32202
Sequence    

Annotation

kegg
ID rcu:RCOM_0311770
description chaperonin-60kD, ch60, putative
nr
ID XP_012068975.1
description PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q93ZM7
description Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=2 SV=2
trembl
ID B9SN32
description Chaperonin-60kD, ch60, putative OS=Ricinus communis GN=RCOM_0311770 PE=3 SV=1
Gene Ontology
ID GO:0005774
description chaperonin cpn60-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58415: 27815-28830 , PASA_asmbl_58416: 28902-30237 , PASA_asmbl_58417: 30428-30769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007924_020 0.0 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_000622_040 0.062318771 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
3 Hb_044662_070 0.0718669636 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
4 Hb_008289_060 0.0790417696 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
5 Hb_000429_170 0.082899225 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
6 Hb_003408_030 0.0852509982 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_003376_120 0.0875511517 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
8 Hb_001711_030 0.0900778302 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
9 Hb_023386_080 0.0903864602 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
10 Hb_002527_070 0.0931444828 - - axonemal dynein light chain, putative [Ricinus communis]
11 Hb_002918_200 0.094726869 - - -
12 Hb_003408_020 0.0952168391 - - hypothetical protein RCOM_0453040 [Ricinus communis]
13 Hb_003175_040 0.0956515291 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
14 Hb_000753_130 0.0956900301 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_000146_020 0.0961802933 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
16 Hb_000922_270 0.0965689885 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_000329_040 0.0966156683 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
18 Hb_000634_100 0.0966503153 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
19 Hb_000834_270 0.0968583566 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_005000_070 0.0974546477 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]

Gene co-expression network

sample Hb_007924_020 Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_007924_020--Hb_000622_040 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_000429_170 Hb_000429_170 Hb_007924_020--Hb_000429_170 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_000622_040--Hb_000429_170 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_034299_060 Hb_034299_060 Hb_000622_040--Hb_034299_060 Hb_005000_070 Hb_005000_070 Hb_000622_040--Hb_005000_070 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_044662_070--Hb_003376_120 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_000429_170--Hb_034299_060 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_003408_030--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003376_120--Hb_023386_080 Hb_003376_120--Hb_000627_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3873 2.68275 2.80131 2.35457 7.47648 7.0254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9445 13.9542 18.1014 4.17729 3.38123

CAGE analysis