Hb_007924_040

Information

Type -
Description -
Location Contig7924: 40225-42534
Sequence    

Annotation

kegg
ID rcu:RCOM_0939530
description protein binding protein, putative
nr
ID XP_011005677.1
description PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
swissprot
ID O81765
description Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1
trembl
ID B9RZI2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0939530 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pollen-specific leucine-rich repeat extensin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007924_040 0.0 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
2 Hb_003683_100 0.0008698179 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000474_020 0.0025234869 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_001072_060 0.0051965682 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
5 Hb_035484_010 0.0412164909 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
6 Hb_029154_020 0.125097999 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_029793_020 0.1252201216 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002223_010 0.1256290396 - - hypothetical protein VITISV_009489 [Vitis vinifera]
9 Hb_004337_010 0.1256437186 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_003207_140 0.1285046976 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
11 Hb_000676_210 0.1287952675 - - Cytochrome P450 superfamily protein [Theobroma cacao]
12 Hb_004730_030 0.131803711 - - synaptonemal complex protein, putative [Ricinus communis]
13 Hb_002431_070 0.1320679045 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
14 Hb_085438_010 0.1321594107 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
15 Hb_007908_010 0.1343878955 - - -
16 Hb_108331_010 0.1372101701 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_163434_010 0.1397445098 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
18 Hb_130470_010 0.1488587342 - - hypothetical protein, partial [Pseudomonas tolaasii]
19 Hb_003226_270 0.1493024845 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
20 Hb_001244_030 0.1727998414 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007924_040 Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_007924_040--Hb_003683_100 Hb_000474_020 Hb_000474_020 Hb_007924_040--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_007924_040--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007924_040--Hb_035484_010 Hb_029154_020 Hb_029154_020 Hb_007924_040--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_007924_040--Hb_029793_020 Hb_003683_100--Hb_000474_020 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020 Hb_000474_020--Hb_001072_060 Hb_000474_020--Hb_035484_010 Hb_000474_020--Hb_029154_020 Hb_000474_020--Hb_029793_020 Hb_001072_060--Hb_035484_010 Hb_001072_060--Hb_029154_020 Hb_001072_060--Hb_029793_020 Hb_035484_010--Hb_029154_020 Hb_035484_010--Hb_029793_020 Hb_029154_020--Hb_029793_020 Hb_002223_010 Hb_002223_010 Hb_029154_020--Hb_002223_010 Hb_004337_010 Hb_004337_010 Hb_029154_020--Hb_004337_010 Hb_003207_140 Hb_003207_140 Hb_029154_020--Hb_003207_140 Hb_000676_210 Hb_000676_210 Hb_029154_020--Hb_000676_210 Hb_004730_030 Hb_004730_030 Hb_029154_020--Hb_004730_030 Hb_029793_020--Hb_002223_010 Hb_029793_020--Hb_004337_010 Hb_029793_020--Hb_003207_140 Hb_029793_020--Hb_000676_210 Hb_029793_020--Hb_004730_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0151529 0 0 0.0642976

CAGE analysis