Hb_007925_010

Information

Type -
Description -
Location Contig7925: 9512-13917
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07710g
description POPTRDRAFT_722643; asparagine synthetase family protein
nr
ID XP_012079122.1
description PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
swissprot
ID P49078
description Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2
trembl
ID A0A067LBF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17398 PE=4 SV=1
Gene Ontology
ID GO:0004066
description asparagine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58418: 9765-13912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007925_010 0.0 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
2 Hb_001289_020 0.1505203613 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
3 Hb_105959_010 0.1542488987 - - asparagine synthetase, putative [Ricinus communis]
4 Hb_002316_080 0.1734545715 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
5 Hb_069355_010 0.1914704484 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
6 Hb_007416_100 0.1937544883 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
7 Hb_000246_130 0.1949420699 - - tubulin alpha chain, putative [Ricinus communis]
8 Hb_010883_180 0.1963661563 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
9 Hb_000098_170 0.1983309655 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
10 Hb_000300_520 0.2029612811 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
11 Hb_000496_110 0.2036239281 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
12 Hb_103942_030 0.2041582883 - - protein with unknown function [Ricinus communis]
13 Hb_000086_090 0.2062783832 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
14 Hb_002498_030 0.2126985959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012090_030 0.2127189293 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
16 Hb_000210_100 0.2150011183 - - pepsin A, putative [Ricinus communis]
17 Hb_000054_010 0.2154133277 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_004055_020 0.2158181702 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
19 Hb_007534_060 0.2165088248 - - protein binding protein, putative [Ricinus communis]
20 Hb_019516_060 0.2170985672 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]

Gene co-expression network

sample Hb_007925_010 Hb_007925_010 Hb_001289_020 Hb_001289_020 Hb_007925_010--Hb_001289_020 Hb_105959_010 Hb_105959_010 Hb_007925_010--Hb_105959_010 Hb_002316_080 Hb_002316_080 Hb_007925_010--Hb_002316_080 Hb_069355_010 Hb_069355_010 Hb_007925_010--Hb_069355_010 Hb_007416_100 Hb_007416_100 Hb_007925_010--Hb_007416_100 Hb_000246_130 Hb_000246_130 Hb_007925_010--Hb_000246_130 Hb_001289_020--Hb_069355_010 Hb_000210_100 Hb_000210_100 Hb_001289_020--Hb_000210_100 Hb_007534_060 Hb_007534_060 Hb_001289_020--Hb_007534_060 Hb_000300_520 Hb_000300_520 Hb_001289_020--Hb_000300_520 Hb_001289_020--Hb_105959_010 Hb_008725_080 Hb_008725_080 Hb_105959_010--Hb_008725_080 Hb_003813_180 Hb_003813_180 Hb_105959_010--Hb_003813_180 Hb_000742_160 Hb_000742_160 Hb_105959_010--Hb_000742_160 Hb_003408_010 Hb_003408_010 Hb_105959_010--Hb_003408_010 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_002316_080--Hb_000246_130 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_002316_080--Hb_000086_090 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_069355_010--Hb_000210_100 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_007416_100--Hb_020805_140 Hb_000300_480 Hb_000300_480 Hb_007416_100--Hb_000300_480 Hb_007416_100--Hb_000210_100 Hb_000107_350 Hb_000107_350 Hb_007416_100--Hb_000107_350 Hb_011310_040 Hb_011310_040 Hb_007416_100--Hb_011310_040 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.09091 1.35758 8.85357 40.3203 1.32276 0.338085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28675 1.0584 7.79537 1.27019 11.4842

CAGE analysis